Literature DB >> 12463353

Principal component analysis of TOF-SIMS images of organic monolayers.

Mark C Biesinger1, Pierre-yves Paepegaey, N Stewart McIntyre, Robert R Harbottle, Nils O Petersen.   

Abstract

Principal component analysis (PCA) is a statistical method used to find combinations of variables or factors that describe the most important trends in the data. PCA has been combined with time-of-flight secondary ion mass spectrometry (TOF-SIMS) data to extract new information and find relations between species contained in complex systems. Monolayers of dipalmitoylphosphatidylcholine alone and mixed with palmitoyloleoylphosphatidylglycerol prepared using the Langmuir-Blodgett technique are discussed. PCA software provides image scores and corresponding loadings for each significant principal component. Image plots of the scores show the spatial distribution and intensity of the species defined by the loading plots (mass spectral features). The intensity and resolution of the image scores can result in substantial improvement over that of the regular TOF-SIMS images especially when static conditions are used for small analysis areas. Also, some of the effects of topography and matrix in the images can be removed, allowing for a better presentation of chemical variations.

Entities:  

Year:  2002        PMID: 12463353     DOI: 10.1021/ac020311n

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  15 in total

1.  Lipid specificity of surfactant protein B studied by time-of-flight secondary ion mass spectrometry.

Authors:  D Breitenstein; J J Batenburg; B Hagenhoff; H-J Galla
Journal:  Biophys J       Date:  2006-04-21       Impact factor: 4.033

2.  Multivariate analysis strategies for processing ToF-SIMS images of biomaterials.

Authors:  Bonnie J Tyler; Gaurav Rayal; David G Castner
Journal:  Biomaterials       Date:  2007-02-09       Impact factor: 12.479

3.  Localization of sphingomyelin in cholesterol domains by imaging mass spectrometry.

Authors:  Carolyn M McQuaw; Leiliang Zheng; Andrew G Ewing; Nicholas Winograd
Journal:  Langmuir       Date:  2007-04-07       Impact factor: 3.882

4.  A modified squeeze-out mechanism for generating high surface pressures with pulmonary surfactant.

Authors:  Eleonora Keating; Yi Y Zuo; Seyed M Tadayyon; Nils O Petersen; Fred Possmayer; Ruud A W Veldhuizen
Journal:  Biochim Biophys Acta       Date:  2011-12-21

Review 5.  Unsupervised machine learning for exploratory data analysis in imaging mass spectrometry.

Authors:  Nico Verbeeck; Richard M Caprioli; Raf Van de Plas
Journal:  Mass Spectrom Rev       Date:  2019-10-11       Impact factor: 10.946

6.  A ToF-SIMS study of the lateral organization of lipids and proteins in pulmonary surfactant systems.

Authors:  Eleonora Keating; Alan J Waring; Frans J Walther; Fred Possmayer; Ruud A W Veldhuizen; Nils O Petersen
Journal:  Biochim Biophys Acta       Date:  2010-11-24

7.  Mass spectral imaging of glycophospholipids, cholesterol, and glycophorin a in model cell membranes.

Authors:  Matthew J Baker; Leiliang Zheng; Nicholas Winograd; Nicholas P Lockyer; John C Vickerman
Journal:  Langmuir       Date:  2008-09-13       Impact factor: 3.882

8.  Calcium ions as "miscibility switch": colocalization of surfactant protein B with anionic lipids under absolute calcium free conditions.

Authors:  Mohammed Saleem; Michaela C Meyer; Daniel Breitenstein; Hans-Joachim Galla
Journal:  Biophys J       Date:  2009-07-22       Impact factor: 4.033

9.  Solubility versus electrostatics: what determines lipid/protein interaction in lung surfactant.

Authors:  M Seifert; D Breitenstein; U Klenz; M C Meyer; H-J Galla
Journal:  Biophys J       Date:  2007-05-18       Impact factor: 4.033

10.  Effect of cholesterol on the biophysical and physiological properties of a clinical pulmonary surfactant.

Authors:  Eleonora Keating; Luna Rahman; James Francis; Anne Petersen; Fred Possmayer; Ruud Veldhuizen; Nils O Petersen
Journal:  Biophys J       Date:  2007-05-25       Impact factor: 4.033

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