Literature DB >> 12454651

Functional exploration of the C. elegans genome using DNA microarrays.

Valerie Reinke1.   

Abstract

Global changes in gene expression underlie developmental processes such as organogenesis, embryogenesis and aging in Caenorhabditis elegans. Recently developed methods allow gene expression profiles to be determined selectively for individual tissues and cell types. Results from both whole-animal and tissue-specific expression profiling have provided an unprecedented view into genome organization and gene function. Integration of these results with other types of functional genomics data gathered from RNA-mediated interference and yeast two-hybrid analyses will allow rapid identification and exploration of the complex functional gene networks that govern C. elegans development.

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Year:  2002        PMID: 12454651     DOI: 10.1038/ng1039

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  10 in total

1.  RNAiDB and PhenoBlast: web tools for genome-wide phenotypic mapping projects.

Authors:  Kristin C Gunsalus; Wan-Chen Yueh; Philip MacMenamin; Fabio Piano
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

2.  ExpressYourself: A modular platform for processing and visualizing microarray data.

Authors:  Nicholas M Luscombe; Thomas E Royce; Paul Bertone; Nathaniel Echols; Christine E Horak; Joseph T Chang; Michael Snyder; Mark Gerstein
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

3.  Multi-species microarrays reveal the effect of sequence divergence on gene expression profiles.

Authors:  Yoav Gilad; Scott A Rifkin; Paul Bertone; Mark Gerstein; Kevin P White
Journal:  Genome Res       Date:  2005-05       Impact factor: 9.043

4.  RNA-seq in the tetraploid Xenopus laevis enables genome-wide insight in a classic developmental biology model organism.

Authors:  Nirav M Amin; Panna Tandon; Erin Osborne Nishimura; Frank L Conlon
Journal:  Methods       Date:  2013-06-20       Impact factor: 3.608

Review 5.  Xenobiotic detoxification in the nematode Caenorhabditis elegans.

Authors:  Tim H Lindblom; Allyn K Dodd
Journal:  J Exp Zool A Comp Exp Biol       Date:  2006-09-01

6.  Translation of a small subset of Caenorhabditis elegans mRNAs is dependent on a specific eukaryotic translation initiation factor 4E isoform.

Authors:  Tzvetanka D Dinkova; Brett D Keiper; Nadejda L Korneeva; Eric J Aamodt; Robert E Rhoads
Journal:  Mol Cell Biol       Date:  2005-01       Impact factor: 4.272

7.  A genome-wide gene function prediction resource for Drosophila melanogaster.

Authors:  Han Yan; Kavitha Venkatesan; John E Beaver; Niels Klitgord; Muhammed A Yildirim; Tong Hao; David E Hill; Michael E Cusick; Norbert Perrimon; Frederick P Roth; Marc Vidal
Journal:  PLoS One       Date:  2010-08-12       Impact factor: 3.240

8.  A statistical framework for modeling gene expression using chromatin features and application to modENCODE datasets.

Authors:  Chao Cheng; Koon-Kiu Yan; Kevin Y Yip; Joel Rozowsky; Roger Alexander; Chong Shou; Mark Gerstein
Journal:  Genome Biol       Date:  2011-02-16       Impact factor: 13.583

Review 9.  Wormnet: a crystal ball for Caenorhabditis elegans.

Authors:  Stephen E Von Stetina; Susan E Mango
Journal:  Genome Biol       Date:  2008-06-02       Impact factor: 13.583

Review 10.  Spermatogenesis.

Authors:  Diana S Chu; Diane C Shakes
Journal:  Adv Exp Med Biol       Date:  2013       Impact factor: 3.650

  10 in total

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