Literature DB >> 12454642

Options available--from start to finish--for obtaining data from DNA microarrays II.

Andrew J Holloway1, Ryan K van Laar, Richard W Tothill, David D L Bowtell.   

Abstract

Microarray technology has undergone a rapid evolution. With widespread interest in large-scale genomic research, an abundance of equipment and reagents have now become available and affordable to a large cross section of the scientific community. As protocols become more refined, careful investigators are able to obtain good quality microarray data quickly. In most recent times, however, perhaps one of the biggest obstacles researchers face is not the manufacture and use of microarrays at the bench, but storage and analysis of the array data. This review discusses the most recent equipment, reagents and protocols available to the researcher, as well as describing data analysis and storage options available from the evolving field of microarray informatics.

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Year:  2002        PMID: 12454642     DOI: 10.1038/ng1030

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  35 in total

1.  Evaluation of gene expression measurements from commercial microarray platforms.

Authors:  Paul K Tan; Thomas J Downey; Edward L Spitznagel; Pin Xu; Dadin Fu; Dimiter S Dimitrov; Richard A Lempicki; Bruce M Raaka; Margaret C Cam
Journal:  Nucleic Acids Res       Date:  2003-10-01       Impact factor: 16.971

2.  A versatile assay for high-throughput gene expression profiling on universal array matrices.

Authors:  Jian-Bing Fan; Joanne M Yeakley; Marina Bibikova; Eugene Chudin; Eliza Wickham; Jing Chen; Dennis Doucet; Philippe Rigault; Baohong Zhang; Richard Shen; Celeste McBride; Hai-Ri Li; Xiang-Dong Fu; Arnold Oliphant; David L Barker; Mark S Chee
Journal:  Genome Res       Date:  2004-05       Impact factor: 9.043

3.  Optimization of probe length and the number of probes per gene for optimal microarray analysis of gene expression.

Authors:  Cheng-Chung Chou; Chun-Houh Chen; Te-Tsui Lee; Konan Peck
Journal:  Nucleic Acids Res       Date:  2004-07-08       Impact factor: 16.971

4.  Decoding randomly ordered DNA arrays.

Authors:  Kevin L Gunderson; Semyon Kruglyak; Michael S Graige; Francisco Garcia; Bahram G Kermani; Chanfeng Zhao; Diping Che; Todd Dickinson; Eliza Wickham; Jim Bierle; Dennis Doucet; Monika Milewski; Robert Yang; Chris Siegmund; Juergen Haas; Lixin Zhou; Arnold Oliphant; Jian-Bing Fan; Steven Barnard; Mark S Chee
Journal:  Genome Res       Date:  2004-04-12       Impact factor: 9.043

Review 5.  Platelet genomics and proteomics in human health and disease.

Authors:  Iain C Macaulay; Philippa Carr; Arief Gusnanto; Willem H Ouwehand; Des Fitzgerald; Nicholas A Watkins
Journal:  J Clin Invest       Date:  2005-12       Impact factor: 14.808

6.  Inbreeding by environmental interactions affect gene expression in Drosophila melanogaster.

Authors:  Torsten Nygaard Kristensen; Peter Sørensen; Kamilla Sofie Pedersen; Mogens Kruhøffer; Volker Loeschcke
Journal:  Genetics       Date:  2006-04-19       Impact factor: 4.562

Review 7.  Genomic platforms for cancer research: potential diagnostic and prognostic applications in clinical oncology.

Authors:  Pedro Jares; Elías Campo
Journal:  Clin Transl Oncol       Date:  2006-03       Impact factor: 3.405

8.  Detection and identification of intestinal pathogenic bacteria by hybridization to oligonucleotide microarrays.

Authors:  Lian-Qun Jin; Jun-Wen Li; Sheng-Qi Wang; Fu-Huan Chao; Xin-Wei Wang; Zheng-Quan Yuan
Journal:  World J Gastroenterol       Date:  2005-12-28       Impact factor: 5.742

9.  Exploring the fitness landscape of an RNA virus by using a universal barcode microarray.

Authors:  Adam S Lauring; Raul Andino
Journal:  J Virol       Date:  2011-02-02       Impact factor: 5.103

10.  A comparison of gene expression in mouse liver and kidney in obstructive cholestasis utilizing high-density oligonucleotide microarray technology.

Authors:  Gerald U Denk; Shi-Ying Cai; Wen-Sheng Chen; Aiping Lin; Carol J Soroka; James L Boyer
Journal:  World J Gastroenterol       Date:  2006-04-28       Impact factor: 5.742

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