Literature DB >> 12450865

Bacterial group II introns in a deep-sea hydrothermal vent environment.

Mircea Podar1, Lauren Mullineaux, Hon-Ren Huang, Philip S Perlman, Mitchell L Sogin.   

Abstract

Group II introns are catalytic RNAs and mobile retrotransposable elements known to be present in the genomes of some nonmarine bacteria and eukaryotic organelles. Here we report the discovery of group II introns in a bacterial mat sample collected from a deep-sea hydrothermal vent near 9 degrees N on the East Pacific Rise. One of the introns was shown to self-splice in vitro. This is the first example of marine bacterial introns from molecular population structure studies of microorganisms that live in the proximity of hydrothermal vents. These types of mobile genetic elements may prove useful in improving our understanding of bacterial genome evolution and may serve as valuable markers in comparative studies of bacterial communities.

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Year:  2002        PMID: 12450865      PMCID: PMC134447          DOI: 10.1128/AEM.68.12.6392-6398.2002

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  33 in total

Review 1.  Molecular ecology of hydrothermal vent microbial communities.

Authors:  C Jeanthon
Journal:  Antonie Van Leeuwenhoek       Date:  2000-02       Impact factor: 2.271

2.  Phylogenetic relationships among group II intron ORFs.

Authors:  S Zimmerly; G Hausner
Journal:  Nucleic Acids Res       Date:  2001-03-01       Impact factor: 16.971

3.  Diversity of thiosulfate-oxidizing bacteria from marine sediments and hydrothermal vents.

Authors:  A Teske; T Brinkhoff; G Muyzer; D P Moser; J Rethmeier; H W Jannasch
Journal:  Appl Environ Microbiol       Date:  2000-08       Impact factor: 4.792

4.  Retrotransposition of a yeast group II intron occurs by reverse splicing directly into ectopic DNA sites.

Authors:  L Dickson; H R Huang; L Liu; M Matsuura; A M Lambowitz; P S Perlman
Journal:  Proc Natl Acad Sci U S A       Date:  2001-10-30       Impact factor: 11.205

5.  Compilation and analysis of group II intron insertions in bacterial genomes: evidence for retroelement behavior.

Authors:  Lixin Dai; Steven Zimmerly
Journal:  Nucleic Acids Res       Date:  2002-03-01       Impact factor: 16.971

6.  Novel bacterial and archaeal lineages from an in situ growth chamber deployed at a Mid-Atlantic Ridge hydrothermal vent.

Authors:  A L Reysenbach; K Longnecker; J Kirshtein
Journal:  Appl Environ Microbiol       Date:  2000-09       Impact factor: 4.792

Review 7.  The recent origins of introns.

Authors:  J D Palmer; J M Logsdon
Journal:  Curr Opin Genet Dev       Date:  1991-12       Impact factor: 5.578

Review 8.  Structure and activities of group II introns.

Authors:  F Michel; J L Ferat
Journal:  Annu Rev Biochem       Date:  1995       Impact factor: 23.643

9.  Phylogenetic characterization of the epibiotic bacteria associated with the hydrothermal vent polychaete Alvinella pompejana.

Authors:  A Haddad; F Camacho; P Durand; S C Cary
Journal:  Appl Environ Microbiol       Date:  1995-05       Impact factor: 4.792

10.  Multiple group II self-splicing introns in mobile DNA from Escherichia coli.

Authors:  J L Ferat; M Le Gouar; F Michel
Journal:  C R Acad Sci III       Date:  1994-02
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  1 in total

1.  Potential for alternative intron-exon pairings in group II intron RmInt1 from Sinorhizobium meliloti and its relatives.

Authors:  María Costa; François Michel; Nicolás Toro
Journal:  RNA       Date:  2006-01-23       Impact factor: 4.942

  1 in total

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