Literature DB >> 12446146

Orthology, paralogy and proposed classification for paralog subtypes.

Erik L L Sonnhammer, Eugene V Koonin.   

Abstract

Mesh：

Year:  2002        PMID： 12446146     DOI： 10.1016/s0168-9525(02)02793-2

Source DB:  PubMed          Journal:  Trends Genet        ISSN： 0168-9525            Impact factor:   11.639


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  168 in total

1.  Comprehensive analysis of orthologous protein domains using the HOPS database.

Authors:  Christian E V Storm; Erik L L Sonnhammer
Journal:  Genome Res       Date:  2003-10       Impact factor: 9.043

2.  Prevalence of intron gain over intron loss in the evolution of paralogous gene families.

Authors:  Vladimir N Babenko; Igor B Rogozin; Sergei L Mekhedov; Eugene V Koonin
Journal:  Nucleic Acids Res       Date:  2004-07-14       Impact factor: 16.971

3.  Genome-wide molecular clock and horizontal gene transfer in bacterial evolution.

Authors:  Pavel S Novichkov; Marina V Omelchenko; Mikhail S Gelfand; Andrei A Mironov; Yuri I Wolf; Eugene V Koonin
Journal:  J Bacteriol       Date:  2004-10       Impact factor: 3.490

4.  Quantifying modularity in the evolution of biomolecular systems.

Authors:  Berend Snel; Martijn A Huynen
Journal:  Genome Res       Date:  2004-03       Impact factor: 9.043

5.  Gene expression intensity shapes evolutionary rates of the proteins encoded by the vertebrate genome.

Authors:  Sankar Subramanian; Sudhir Kumar
Journal:  Genetics       Date:  2004-09       Impact factor: 4.562

6.  Comparative analysis of complete genomes reveals gene loss, acquisition and acceleration of evolutionary rates in Metazoa, suggests a prevalence of evolution via gene acquisition and indicates that the evolutionary rates in animals tend to be conserved.

Authors:  Vladimir N Babenko; Dmitri M Krylov
Journal:  Nucleic Acids Res       Date:  2004-09-24       Impact factor: 16.971

7.  Screening of tissue-specific genes and promoters in tomato by comparing genome wide expression profiles of Arabidopsis orthologues.

Authors:  Chan Ju Lim; Ha Yeon Lee; Woong Bom Kim; Bok-Sim Lee; Jungeun Kim; Raza Ahmad; Hyun A Kim; So Young Yi; Cheol-Goo Hur; Suk-Yoon Kwon
Journal:  Mol Cells       Date:  2012-06-12       Impact factor: 5.034

8.  Molecular cloning of Brassica napus TRANSPARENT TESTA 2 gene family encoding potential MYB regulatory proteins of proanthocyanidin biosynthesis.

Authors:  Yun-Liang Wei; Jia-Na Li; Jun Lu; Zhang-Lin Tang; Dong-Chun Pu; You-Rong Chai
Journal:  Mol Biol Rep       Date:  2006-11-18       Impact factor: 2.316

9.  Predicting protein-protein interaction by searching evolutionary tree automorphism space.

Authors:  Raja Jothi; Maricel G Kann; Teresa M Przytycka
Journal:  Bioinformatics       Date:  2005-06       Impact factor: 6.937

10.  Functional annotation prediction: all for one and one for all.

Authors:  Ori Sasson; Noam Kaplan; Michal Linial
Journal:  Protein Sci       Date:  2006-05-02       Impact factor: 6.725
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