Literature DB >> 12443261

Evolutionary reconstruction of networks.

Mads Ipsen1, Alexander S Mikhailov.   

Abstract

Can a graph specifying the pattern of connections of a dynamical network be reconstructed from statistical properties of a signal generated by such a system? In this model study, we present a Metropolis algorithm for reconstruction of graphs from their Laplacian spectra. Through a stochastic process of mutations and selection, evolving test networks converge to a reference graph. Applying the method to several examples of random graphs, clustered graphs, and small-world networks, we show that the proposed stochastic evolution allows exact reconstruction of relatively small networks and yields good approximations in the case of large sizes.

Year:  2002        PMID: 12443261     DOI: 10.1103/PhysRevE.66.046109

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  13 in total

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2.  Interplay between Topology and Dynamics in Excitation Patterns on Hierarchical Graphs.

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3.  Spectral plots and the representation and interpretation of biological data.

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Journal:  PLoS One       Date:  2010-12-16       Impact factor: 3.240

5.  The Laplacian spectrum of neural networks.

Authors:  Siemon C de Lange; Marcel A de Reus; Martijn P van den Heuvel
Journal:  Front Comput Neurosci       Date:  2014-01-13       Impact factor: 2.380

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Journal:  J Transl Med       Date:  2016-11-22       Impact factor: 5.531

7.  Finding quasi-optimal network topologies for information transmission in active networks.

Authors:  Murilo S Baptista; Josué X de Carvalho; Mahir S Hussein
Journal:  PLoS One       Date:  2008-10-22       Impact factor: 3.240

8.  Stability indicators in network reconstruction.

Authors:  Michele Filosi; Roberto Visintainer; Samantha Riccadonna; Giuseppe Jurman; Cesare Furlanello
Journal:  PLoS One       Date:  2014-02-27       Impact factor: 3.240

9.  DTW-MIC Coexpression Networks from Time-Course Data.

Authors:  Samantha Riccadonna; Giuseppe Jurman; Roberto Visintainer; Michele Filosi; Cesare Furlanello
Journal:  PLoS One       Date:  2016-03-31       Impact factor: 3.240

10.  Metric projection for dynamic multiplex networks.

Authors:  Giuseppe Jurman
Journal:  Heliyon       Date:  2016-08-04
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