Literature DB >> 12440995

Structure of the 70 S ribosome: implications for movement.

H F Noller1, A Baucom.   

Abstract

The ribosome is a complex molecular machine, with moving parts, many of which are structural elements of rRNA. We compared the X-ray crystal structures of three different functional states of the 30 S ribosomal subunit - two from crystal structures of the isolated 30 S subunit from the Ramakrishnan group and one from a complex of the 70 S ribosome. Even though all three structures are in what could be called the 'ground state' of the subunit, many conformational differences are found, distributed over the whole structure. A striking example is the undulating movement of the penultimate stem of 16S rRNA, which forms several intersubunit bridges with the 50 S subunit.

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Year:  2002        PMID: 12440995     DOI: 10.1042/bst0301159

Source DB:  PubMed          Journal:  Biochem Soc Trans        ISSN: 0300-5127            Impact factor:   5.407


  10 in total

1.  Ribosomal dynamics inferred from variations in experimental measurements.

Authors:  Irene S Gabashvili; Michelle Whirl-Carrillo; Michael Bada; D Rey Banatao; Russ B Altman
Journal:  RNA       Date:  2003-11       Impact factor: 4.942

2.  Photolabile anticodon stem-loop analogs of tRNAPhe as probes of ribosomal structure and structural fluctuation at the decoding center.

Authors:  Zhanna Druzina; Barry S Cooperman
Journal:  RNA       Date:  2004-08-30       Impact factor: 4.942

3.  A 16S rRNA-tRNA product containing a nucleotide phototrimer and specific for tRNA in the P/E hybrid state in the Escherichia coli ribosome.

Authors:  Wayne Huggins; Paul Wollenzien
Journal:  Nucleic Acids Res       Date:  2004-12-14       Impact factor: 16.971

4.  Tracking fluctuation hotspots on the yeast ribosome through the elongation cycle.

Authors:  Suna P Gulay; Sujal Bista; Amitabh Varshney; Serdal Kirmizialtin; Karissa Y Sanbonmatsu; Jonathan D Dinman
Journal:  Nucleic Acids Res       Date:  2017-05-05       Impact factor: 16.971

Review 5.  Ribosome Mechanics Informs about Mechanism.

Authors:  Michael T Zimmermann; Kejue Jia; Robert L Jernigan
Journal:  J Mol Biol       Date:  2015-12-11       Impact factor: 5.469

6.  Assembly of the 5' and 3' minor domains of 16S ribosomal RNA as monitored by tethered probing from ribosomal protein S20.

Authors:  Laura M Dutca; Gloria M Culver
Journal:  J Mol Biol       Date:  2007-11-06       Impact factor: 5.469

7.  Thiostrepton-resistant mutants of Thermus thermophilus.

Authors:  Dale M Cameron; Jill Thompson; Steven T Gregory; Paul E March; Albert E Dahlberg
Journal:  Nucleic Acids Res       Date:  2004-06-15       Impact factor: 16.971

8.  Characteristics of the nuclear (18S, 5.8S, 28S and 5S) and mitochondrial (12S and 16S) rRNA genes of Apis mellifera (Insecta: Hymenoptera): structure, organization, and retrotransposable elements.

Authors:  J J Gillespie; J S Johnston; J J Cannone; R R Gutell
Journal:  Insect Mol Biol       Date:  2006-10       Impact factor: 3.585

9.  Measuring the dynamic surface accessibility of RNA with the small paramagnetic molecule TEMPOL.

Authors:  Vincenzo Venditti; Neri Niccolai; Samuel E Butcher
Journal:  Nucleic Acids Res       Date:  2007-12-01       Impact factor: 16.971

10.  A comparison of structural and evolutionary attributes of Escherichia coli and Thermus thermophilus small ribosomal subunits: signatures of thermal adaptation.

Authors:  Saurav Mallik; Sudip Kundu
Journal:  PLoS One       Date:  2013-08-05       Impact factor: 3.240

  10 in total

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