Literature DB >> 12435508

Secondary and quaternary structural transition of the halophilic archaeon nucleoside diphosphate kinase under high- and low-salt conditions.

Matsujiro Ishibashi1, Tsutomu Arakawa, John S Philo, Kentaro Sakashita, Yasushi Yonezawa, Hiroko Tokunaga, Masao Tokunaga.   

Abstract

Most halophilic enzymes from extremely halophilic archaea are denatured immediately after transfer from high-salt to low-salt medium. However, nucleoside diphosphate kinase (HsNDK) from the extremely halophilic archaeon Halobacterium salinarum seems to be exceptional, since the enzyme exhibited catalytic activity even under the low-salt condition. Here we show the mechanism how HsNDK is active under both high- and low-salt conditions that the HsNDK hexamer in high-salt medium dissociates into a dimer in the low-salt medium without denaturation. The observed change of the subunit structure was accompanied by a large decrease of alpha-helical content and lowered thermal sensitivity, yet keeping the conformations. This novel hexamer to dimer conversion under high- and low-salt conditions, respectively, seems to be the mechanism by which HsNDK is avoided from the irreversible denaturation.

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Year:  2002        PMID: 12435508     DOI: 10.1111/j.1574-6968.2002.tb11441.x

Source DB:  PubMed          Journal:  FEMS Microbiol Lett        ISSN: 0378-1097            Impact factor:   2.742


  8 in total

1.  Molecular mechanism of distinct salt-dependent enzyme activity of two halophilic nucleoside diphosphate kinases.

Authors:  Akihiro Yamamura; Takefumi Ichimura; Masahiro Kamekura; Toru Mizuki; Ron Usami; Tsukasa Makino; Jun Ohtsuka; Ken-ichi Miyazono; Masahiko Okai; Koji Nagata; Masaru Tanokura
Journal:  Biophys J       Date:  2009-06-03       Impact factor: 4.033

2.  Amyloid fibril formation in vitro from halophilic metal binding protein: its high solubility and reversibility minimized formation of amorphous protein aggregations.

Authors:  Yuhei Tokunaga; Mitsuharu Matsumoto; Masao Tokunaga; Tsutomu Arakawa; Yasushi Sugimoto
Journal:  Protein Sci       Date:  2013-09-30       Impact factor: 6.725

3.  Activation and thermal stabilization of a recombinant γ-glutamyltranspeptidase from Bacillus licheniformis ATCC 27811 by monovalent cations.

Authors:  Long-Liu Lin; Bo-Yuan Lu; Meng-Chun Chi; Yu-Fen Huang; Min-Guan Lin; Tzu-Fan Wang
Journal:  Appl Microbiol Biotechnol       Date:  2022-03-01       Impact factor: 4.813

4.  Engineering of halophilic enzymes: two acidic amino acid residues at the carboxy-terminal region confer halophilic characteristics to Halomonas and Pseudomonas nucleoside diphosphate kinases.

Authors:  Hiroko Tokunaga; Tsutomu Arakawa; Masao Tokunaga
Journal:  Protein Sci       Date:  2008-06-23       Impact factor: 6.725

5.  Nucleoside Diphosphate Kinase from Psychrophilic Pseudoalteromonas sp. AS-131 Isolated from Antarctic Ocean.

Authors:  Yasushi Yonezawa; Aiko Nagayama; Hiroko Tokunaga; Matsujiro Ishibashi; Shigeki Arai; Ryota Kuroki; Keiichi Watanabe; Tsutomu Arakawa; Masao Tokunaga
Journal:  Protein J       Date:  2015-08       Impact factor: 2.371

6.  Intrinsic halotolerance of the psychrophilic alpha-amylase from Pseudoalteromonas haloplanktis.

Authors:  Soundararajan Srimathi; Gurunathan Jayaraman; Georges Feller; Bengt Danielsson; Paranji R Narayanan
Journal:  Extremophiles       Date:  2007-02-20       Impact factor: 3.035

7.  Effects of ionic strength on the folding and stability of SAMP1, a ubiquitin-like halophilic protein.

Authors:  Takuya Mizukami; John T Bedford; ShanHui Liao; Lesley H Greene; Heinrich Roder
Journal:  Biophys J       Date:  2022-01-19       Impact factor: 3.699

Review 8.  Protective role of salt in catalysis and maintaining structure of halophilic proteins against denaturation.

Authors:  Rajeshwari Sinha; Sunil K Khare
Journal:  Front Microbiol       Date:  2014-04-09       Impact factor: 5.640

  8 in total

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