Literature DB >> 12432409

Computational approaches to cellular rhythms.

Albert Goldbeter1.   

Abstract

Oscillations arise in genetic and metabolic networks as a result of various modes of cellular regulation. In view of the large number of variables involved and of the complexity of feedback processes that generate oscillations, mathematical models and numerical simulations are needed to fully grasp the molecular mechanisms and functions of biological rhythms. Models are also necessary to comprehend the transition from simple to complex oscillatory behaviour and to delineate the conditions under which they arise. Examples ranging from calcium oscillations to pulsatile intercellular communication and circadian rhythms illustrate how computational biology contributes to clarify the molecular and dynamical bases of cellular rhythms.

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Year:  2002        PMID: 12432409     DOI: 10.1038/nature01259

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  130 in total

1.  A dynamic model for functional mapping of biological rhythms.

Authors:  Guifang Fu; Jiangtao Luo; Arthur Berg; Zhong Wang; Jiahan Li; Kiranmoy Das; Runze Li; Rongling Wu
Journal:  J Biol Dyn       Date:  2011-01       Impact factor: 2.179

2.  Multisite phosphorylation and network dynamics of cyclin-dependent kinase signaling in the eukaryotic cell cycle.

Authors:  Ling Yang; W Robb MacLellan; Zhangang Han; James N Weiss; Zhilin Qu
Journal:  Biophys J       Date:  2004-06       Impact factor: 4.033

3.  Robustness properties of circadian clock architectures.

Authors:  Jörg Stelling; Ernst Dieter Gilles; Francis J Doyle
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-30       Impact factor: 11.205

Review 4.  Dynamical systems approach to endothelial heterogeneity.

Authors:  Erzsébet Ravasz Regan; William C Aird
Journal:  Circ Res       Date:  2012-06-22       Impact factor: 17.367

5.  Automated refinement and inference of analytical models for metabolic networks.

Authors:  Michael D Schmidt; Ravishankar R Vallabhajosyula; Jerry W Jenkins; Jonathan E Hood; Abhishek S Soni; John P Wikswo; Hod Lipson
Journal:  Phys Biol       Date:  2011-08-10       Impact factor: 2.583

6.  Model-driven designs of an oscillating gene network.

Authors:  Lisa M Tuttle; Howard Salis; Jonathan Tomshine; Yiannis N Kaznessis
Journal:  Biophys J       Date:  2005-09-23       Impact factor: 4.033

7.  Model of calcium oscillations due to negative feedback in olfactory cilia.

Authors:  J Reidl; P Borowski; A Sensse; J Starke; M Zapotocky; M Eiswirth
Journal:  Biophys J       Date:  2005-12-02       Impact factor: 4.033

8.  Minimal model of spiky oscillations in NF-kappaB signaling.

Authors:  Sandeep Krishna; Mogens H Jensen; Kim Sneppen
Journal:  Proc Natl Acad Sci U S A       Date:  2006-07-07       Impact factor: 11.205

9.  A model for the dynamics of human weight cycling.

Authors:  Albert Goldbeter
Journal:  J Biosci       Date:  2006-03       Impact factor: 1.826

10.  Oscillatory nucleocytoplasmic shuttling of the general stress response transcriptional activators Msn2 and Msn4 in Saccharomyces cerevisiae.

Authors:  Michel Jacquet; Georges Renault; Sylvie Lallet; Jan De Mey; Albert Goldbeter
Journal:  J Cell Biol       Date:  2003-05-05       Impact factor: 10.539

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