Literature DB >> 12431124

Mössbauer quadrupole splittings and electronic structure in heme proteins and model systems: a density functional theory investigation.

Yong Zhang1, Junhong Mao, Nathalie Godbout, Eric Oldfield.   

Abstract

We report the results of a series of density functional theory (DFT) calculations aimed at predicting the (57)Fe Mössbauer electric field gradient (EFG) tensors (quadrupole splittings and asymmetry parameters) and their orientations in S = 0, (1)/(2), 1, (3)/(2), 2, and (5)/(2) metalloproteins and/or model systems. Excellent results were found by using a Wachter's all electron basis set for iron, 6-311G for other heavy atoms, and 6-31G for hydrogen atoms, BPW91 and B3LYP exchange-correlation functionals, and spin-unrestricted methods for the paramagnetic systems. For the theory versus experiment correlation, we found R(2) = 0.975, slope = 0.99, intercept = -0.08 mm sec(-)(1), rmsd = 0.30 mm sec(-)(1) (N = 23 points) covering a DeltaE(Q) range of 5.63 mm s(-)(1) when using the BPW91 functional and R(2) = 0.978, slope = 1.12, intercept = -0.26 mm sec(-)(1), rmsd = 0.31 mm sec(-)(1) when using the B3LYP functional. DeltaE(Q) values in the following systems were successfully predicted: (1) ferric low-spin (S = (1)/(2)) systems, including one iron porphyrin with the usual (d(xy))(2)(d(xz)d(yz))(3) electronic configuration and two iron porphyrins with the more unusual (d(xz)d(yz))(4)(d(xy))(1) electronic configuration; (2) ferrous NO-heme model compounds (S = (1)/(2)); (3) ferrous intermediate spin (S = 1) tetraphenylporphinato iron(II); (4) a ferric intermediate spin (S = (3)/(2)) iron porphyrin; (5) ferrous high-spin (S = 2) deoxymyoglobin and deoxyhemoglobin; and (6) ferric high spin (S = (5)/(2)) metmyoglobin plus two five-coordinate and one six-coordinate iron porphyrins. In addition, seven diamagnetic (S = 0, d(6) and d(8)) systems studied previously were reinvestigated using the same functionals and basis set scheme as used for the paramagnetic systems. All computed asymmetry parameters were found to be in good agreement with the available experimental data as were the electric field gradient tensor orientations. In addition, we investigated the electronic structures of several systems, including the (d(xy))(2)(d(xz),d(yz))(3) and (d(xz),d(yz))(4)(d(xy))(1) [Fe(III)/porphyrinate](+) cations as well as the NO adduct of Fe(II)(octaethylporphinate), where interesting information on the spin density distributions can be readily obtained from the computed wave functions.

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Year:  2002        PMID: 12431124     DOI: 10.1021/ja020298o

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  15 in total

Review 1.  Quantum chemical studies of protein structure.

Authors:  Eric Oldfield
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2005-06-29       Impact factor: 6.237

2.  Nuclear resonance vibrational spectroscopy applied to [Fe(OEP)(NO)]: the vibrational assignments of five-coordinate ferrous heme-nitrosyls and implications for electronic structure.

Authors:  Nicolai Lehnert; Mary Grace I Galinato; Florian Paulat; George B Richter-Addo; Wolfgang Sturhahn; Nan Xu; Jiyong Zhao
Journal:  Inorg Chem       Date:  2010-05-03       Impact factor: 5.165

3.  Calibration of DFT Functionals for the Prediction of Fe Mössbauer Spectral Parameters in Iron-Nitrosyl and Iron-Sulfur Complexes: Accurate Geometries Prove Essential.

Authors:  Gregory M Sandala; Kathrin H Hopmann; Abhik Ghosh; Louis Noodleman
Journal:  J Chem Theory Comput       Date:  2011-10-11       Impact factor: 6.006

4.  Inhibition of the Fe(4)S(4)-cluster-containing protein IspH (LytB): electron paramagnetic resonance, metallacycles, and mechanisms.

Authors:  Ke Wang; Weixue Wang; Joo-Hwan No; Yonghui Zhang; Yong Zhang; Eric Oldfield
Journal:  J Am Chem Soc       Date:  2010-05-19       Impact factor: 15.419

5.  The prediction of Fe Mössbauer parameters by the density functional theory: a benchmark study.

Authors:  Arteum D Bochevarov; Richard A Friesner; Stephen J Lippard
Journal:  J Chem Theory Comput       Date:  2010-11-09       Impact factor: 6.006

Review 6.  Freeze-quench (57)Fe-Mössbauer spectroscopy: trapping reactive intermediates.

Authors:  Carsten Krebs; J Martin Bollinger
Journal:  Photosynth Res       Date:  2009 Nov-Dec       Impact factor: 3.573

7.  Density functional theory calculations on the active site of biotin synthase: mechanism of S transfer from the Fe(2)S(2) cluster and the role of 1st and 2nd sphere residues.

Authors:  Atanu Rana; Subal Dey; Amita Agrawal; Abhishek Dey
Journal:  J Biol Inorg Chem       Date:  2015-09-14       Impact factor: 3.358

8.  NMR, IR/Raman, and structural properties in HNO and RNO (R = alkyl and aryl) metalloporphyrins with implication for the HNO-myoglobin complex.

Authors:  Yan Ling; Christopher Mills; Rebecca Weber; Liu Yang; Yong Zhang
Journal:  J Am Chem Soc       Date:  2010-02-10       Impact factor: 15.419

9.  Iron porphyrin carbenes as catalytic intermediates: structures, Mössbauer and NMR spectroscopic properties, and bonding.

Authors:  Rahul L Khade; Wenchao Fan; Yan Ling; Liu Yang; Eric Oldfield; Yong Zhang
Journal:  Angew Chem Int Ed Engl       Date:  2014-06-06       Impact factor: 15.336

10.  Mössbauer, NMR, geometric, and electronic properties in S = 3/2 iron porphyrins.

Authors:  Yan Ling; Yong Zhang
Journal:  J Am Chem Soc       Date:  2009-05-13       Impact factor: 15.419

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