Literature DB >> 12424129

GeneCards 2002: towards a complete, object-oriented, human gene compendium.

Marilyn Safran1, Irina Solomon, Orit Shmueli, Michal Lapidot, Shai Shen-Orr, Avital Adato, Uri Ben-Dor, Nir Esterman, Naomi Rosen, Inga Peter, Tsviya Olender, Vered Chalifa-Caspi, Doron Lancet.   

Abstract

MOTIVATION: In the post-genomic era, functional analysis of genes requires a sophisticated interdisciplinary arsenal. Comprehensive resources are challenged to provide consistently improving, state-of-the-art tools.
RESULTS: GeneCards (Rebhan et al., 1998) has made innovative strides: (a). regular updates and enhancements incorporating new genes enriched with sequences, genomic locations, cDNA assemblies, orthologies, medical information, 3D protein structures, gene expression, and focused SNP summaries; (b). restructured software using object-oriented Perl, migration to schema-driven XML, and (c). pilot studies, introducing methods to produce cards for novel and predicted genes.

Entities:  

Mesh:

Year:  2002        PMID: 12424129     DOI: 10.1093/bioinformatics/18.11.1542

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  72 in total

1.  A Large-scale genetic association study of esophageal adenocarcinoma risk.

Authors:  Chen-Yu Liu; Michael C Wu; Feng Chen; Monica Ter-Minassian; Kofi Asomaning; Rihong Zhai; Zhaoxi Wang; Li Su; Rebecca S Heist; Matthew H Kulke; Xihong Lin; Geoffrey Liu; David C Christiani
Journal:  Carcinogenesis       Date:  2010-05-07       Impact factor: 4.944

2.  IMGT/3Dstructure-DB and IMGT/StructuralQuery, a database and a tool for immunoglobulin, T cell receptor and MHC structural data.

Authors:  Quentin Kaas; Manuel Ruiz; Marie-Paule Lefranc
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

3.  FREP: a database of functional repeats in mouse cDNAs.

Authors:  Takeshi Nagashima; Hideo Matsuda; Diego G Silva; Nikolai Petrovsky; Akihiko Konagaya; Christian Schönbach; Takeya Kasukawa; Takahiro Arakawa; Piero Carninci; Jun Kawai; Yoshihide Hayashizaki
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

4.  Design of Genetics Home Reference: a new NLM consumer health resource.

Authors:  Joyce A Mitchell; Jane Fun; Alexa T McCray
Journal:  J Am Med Inform Assoc       Date:  2004-08-06       Impact factor: 4.497

5.  VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing.

Authors:  Daniel C Koboldt; Qunyuan Zhang; David E Larson; Dong Shen; Michael D McLellan; Ling Lin; Christopher A Miller; Elaine R Mardis; Li Ding; Richard K Wilson
Journal:  Genome Res       Date:  2012-02-02       Impact factor: 9.043

6.  Unique ability of pandemic influenza to downregulate the genes involved in neuronal disorders.

Authors:  Esmaeil Ebrahimie; Zahra Nurollah; Mansour Ebrahimi; Farhid Hemmatzadeh; Jagoda Ignjatovic
Journal:  Mol Biol Rep       Date:  2015-08-06       Impact factor: 2.316

7.  The comparative toxicogenomics database: a cross-species resource for building chemical-gene interaction networks.

Authors:  Carolyn J Mattingly; Michael C Rosenstein; Allan Peter Davis; Glenn T Colby; John N Forrest; James L Boyer
Journal:  Toxicol Sci       Date:  2006-05-04       Impact factor: 4.849

8.  Global reconstruction of the human metabolic network based on genomic and bibliomic data.

Authors:  Natalie C Duarte; Scott A Becker; Neema Jamshidi; Ines Thiele; Monica L Mo; Thuy D Vo; Rohith Srivas; Bernhard Ø Palsson
Journal:  Proc Natl Acad Sci U S A       Date:  2007-01-31       Impact factor: 11.205

Review 9.  Computational approaches to phenotyping: high-throughput phenomics.

Authors:  Yves A Lussier; Yang Liu
Journal:  Proc Am Thorac Soc       Date:  2007-01

10.  PharmGKB: an integrated resource of pharmacogenomic data and knowledge.

Authors:  Li Gong; Ryan P Owen; Winston Gor; Russ B Altman; Teri E Klein
Journal:  Curr Protoc Bioinformatics       Date:  2008-09
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