Literature DB >> 12422527

Comparison of genetic variability between Czech and foreign isolates of phytopathogenic bacteria Clavibacter michiganensis subsp. sepedonicus by Rep-PCR technique.

J Fousek1, I Mráz, K Petrzik.   

Abstract

Repetitive-sequence-based polymerase chain reaction (Rep-PCR) method was used for analysis of genetic variability among bacterial populations from different world locations. Collection of 26 Czech and 13 foreign strains of Clavibacter michiganensis subsp. sepedonicus was amplified using BOX primer targeting to repetitive motif occurring in eubacterial genomes. Genetic fingerprints were visually compared and statistically evaluated by cluster analysis. Genetic similarity was estimated to be approximately 80% among all tested strains. Populations of these bacteria seem to be highly homogeneous; potential influence of geographic origin was not confirmed.

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Year:  2002        PMID： 12422527     DOI： 10.1007/bf02818707

Source DB:  PubMed          Journal:  Folia Microbiol (Praha)        ISSN： 0015-5632            Impact factor:   2.099


  6 in total

1.  THE THREE DS OF PCR-BASED GENOMIC ANALYSIS OF PHYTOBACTERIA: Diversity, Detection, and Disease Diagnosis.

Authors:  FJ Louws; JLW Rademaker; FJ de Bruijn
Journal:  Annu Rev Phytopathol       Date:  1999       Impact factor: 13.078

Review 2.  Short, interspersed repetitive DNA sequences in prokaryotic genomes.

Authors:  J R Lupski; G M Weinstock
Journal:  J Bacteriol       Date:  1992-07       Impact factor: 3.490

3.  Synthetic and complex media for the rapid detection of fluorescence of phytopathogenic pseudomonads: effect of the carbon source.

Authors:  A K Vidaver
Journal:  Appl Microbiol       Date:  1967-11

4.  Rep-PCR mediated genomic fingerprinting of rhizobia and computer-assisted phylogenetic pattern analysis.

Authors:  M Schneider; F J de Bruijn
Journal:  World J Microbiol Biotechnol       Date:  1996-03       Impact factor: 3.312

5.  An improved method for prenatal diagnosis of genetic diseases by analysis of amplified DNA sequences. Application to hemophilia A.

Authors:  S C Kogan; M Doherty; J Gitschier
Journal:  N Engl J Med       Date:  1987-10-15       Impact factor: 91.245

6.  rep-PCR-Mediated Genomic Fingerprinting: A Rapid and Effective Method to Identify Clavibacter michiganensis.

Authors:  F J Louws; J Bell; C M Medina-Mora; C D Smart; D Opgenorth; C A Ishimaru; M K Hausbeck; F J de Bruijn; D W Fulbright
Journal:  Phytopathology       Date:  1998-08       Impact factor: 4.025
  6 in total
  3 in total

1.  Determination of genetic differences between fluid and nonfluid variants of Clavibacter michiganensis subsp. sepedonicus using rep-PCR technique.

Authors:  J Fousek; I Mráz
Journal:  Folia Microbiol (Praha)       Date:  2003       Impact factor: 2.099

2.  Genome of the actinomycete plant pathogen Clavibacter michiganensis subsp. sepedonicus suggests recent niche adaptation.

Authors:  Stephen D Bentley; Craig Corton; Susan E Brown; Andrew Barron; Louise Clark; Jon Doggett; Barbara Harris; Doug Ormond; Michael A Quail; Georgiana May; David Francis; Dennis Knudson; Julian Parkhill; Carol A Ishimaru
Journal:  J Bacteriol       Date:  2008-01-11       Impact factor: 3.490

3.  Heterogeneity of Escherichia coli derived from artiodactyla animals analyzed with the use of rep-PCR fingerprinting.

Authors:  K Baldy-Chudzik; J Niedbach; M Stosik
Journal:  Folia Microbiol (Praha)       Date:  2003       Impact factor: 2.099
  3 in total

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