Literature DB >> 12419182

Responses of four yeast genes to changes in the transcriptional machinery are determined by their promoters.

Jason X Cheng1, Monique Floer, Paul Ononaji, Gene Bryant, Mark Ptashne.   

Abstract

Many yeast genes are distinguished by their specific requirements for different components of the transcriptional machinery. Here we examine four genes that fall into two classes as defined by their dependence on specific components of the transcriptional machinery. We describe a series of hybrid constructs, each of which bears activator binding sites that are associated with a promoter other than that with which they are usually affiliated. We examine expression of these reporters in strains bearing three modifications of the transcriptional machinery. Our results indicate that, in each of these cases, the promoter (and not the activator) determines which components of the transcriptional machinery are required. These and additional results, including those of others, clarify how disparate activators can work at many different promoters.

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Year:  2002        PMID: 12419182     DOI: 10.1016/s0960-9822(02)01257-5

Source DB:  PubMed          Journal:  Curr Biol        ISSN: 0960-9822            Impact factor:   10.834


  25 in total

1.  Positive and negative functions of the SAGA complex mediated through interaction of Spt8 with TBP and the N-terminal domain of TFIIA.

Authors:  Linda Warfield; Jeffrey A Ranish; Steven Hahn
Journal:  Genes Dev       Date:  2004-05-01       Impact factor: 11.361

Review 2.  The unexpected traits associated with core promoter elements.

Authors:  Rivka Dikstein
Journal:  Transcription       Date:  2011 Sep-Oct

3.  Promoter occupancy is a major determinant of chromatin remodeling enzyme requirements.

Authors:  Archana Dhasarathy; Michael P Kladde
Journal:  Mol Cell Biol       Date:  2005-04       Impact factor: 4.272

4.  Targets of the Gal4 transcription activator in functional transcription complexes.

Authors:  Wendy M Reeves; Steven Hahn
Journal:  Mol Cell Biol       Date:  2005-10       Impact factor: 4.272

5.  Genome-wide relationships between TAF1 and histone acetyltransferases in Saccharomyces cerevisiae.

Authors:  Melissa Durant; B Franklin Pugh
Journal:  Mol Cell Biol       Date:  2006-04       Impact factor: 4.272

6.  Differential regulation of NF-kappaB by elongation factors is determined by core promoter type.

Authors:  Liat Amir-Zilberstein; Elena Ainbinder; Leanne Toube; Yuki Yamaguchi; Hiroshi Handa; Rivka Dikstein
Journal:  Mol Cell Biol       Date:  2007-05-14       Impact factor: 4.272

7.  Full and partial genome-wide assembly and disassembly of the yeast transcription machinery in response to heat shock.

Authors:  Sara J Zanton; B Franklin Pugh
Journal:  Genes Dev       Date:  2006-08-15       Impact factor: 11.361

8.  The new core promoter element XCPE1 (X Core Promoter Element 1) directs activator-, mediator-, and TATA-binding protein-dependent but TFIID-independent RNA polymerase II transcription from TATA-less promoters.

Authors:  Yumiko Tokusumi; Ying Ma; Xianzhou Song; Raymond H Jacobson; Shinako Takada
Journal:  Mol Cell Biol       Date:  2007-01-08       Impact factor: 4.272

9.  Yeast TFIID serves as a coactivator for Rap1p by direct protein-protein interaction.

Authors:  Krassimira A Garbett; Manish K Tripathi; Belgin Cencki; Justin H Layer; P Anthony Weil
Journal:  Mol Cell Biol       Date:  2006-10-30       Impact factor: 4.272

10.  Site-specific cross-linking of TBP in vivo and in vitro reveals a direct functional interaction with the SAGA subunit Spt3.

Authors:  Neeman Mohibullah; Steven Hahn
Journal:  Genes Dev       Date:  2008-11-01       Impact factor: 11.361

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