Literature DB >> 12418971

Accurate power approximations for chi2-tests in case-control association studies of complex disease genes.

M R Jackson1, E Genin, M Knapp, J L Escary.   

Abstract

A popular method for the analysis of case-control association studies is to compare the frequencies of the alleles between cases and controls by means of Pearson's chi2-statistic. Here, an approach for computing the power of this test is presented, which by computer simulation is shown to be more reliable than a previously published power approximation. Since the test based on Pearson's chi2- statistic can be anti-conservative if there is an excess of homozygotes for the susceptibility allele in the general population, it has been proposed to analyze case-control association studies by means of a trend test based on genotypes instead of alleles. We present an accurate power approximation for the trend test. The power approximations are implemented in an available computer program 'GenOdyPower', which in addition has an option to determine the empirical power of these tests by simulations.

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Year:  2002        PMID: 12418971     DOI: 10.1017/S0003480002001203

Source DB:  PubMed          Journal:  Ann Hum Genet        ISSN: 0003-4800            Impact factor:   1.670


  7 in total

1.  Power for genetic association study of human longevity using the case-control design.

Authors:  Qihua Tan; Jing Hua Zhao; Dongfeng Zhang; Torben A Kruse; Kaare Christensen
Journal:  Am J Epidemiol       Date:  2008-08-27       Impact factor: 4.897

2.  Sequencing the GRHL3 Coding Region Reveals Rare Truncating Mutations and a Common Susceptibility Variant for Nonsyndromic Cleft Palate.

Authors:  Elisabeth Mangold; Anne C Böhmer; Nina Ishorst; Ann-Kathrin Hoebel; Pinar Gültepe; Hannah Schuenke; Johanna Klamt; Andrea Hofmann; Lina Gölz; Ruth Raff; Peter Tessmann; Stefanie Nowak; Heiko Reutter; Alexander Hemprich; Thomas Kreusch; Franz-Josef Kramer; Bert Braumann; Rudolf Reich; Gül Schmidt; Andreas Jäger; Rudolf Reiter; Sibylle Brosch; Janis Stavusis; Miho Ishida; Rimante Seselgyte; Gudrun E Moore; Markus M Nöthen; Guntram Borck; Khalid A Aldhorae; Baiba Lace; Philip Stanier; Michael Knapp; Kerstin U Ludwig
Journal:  Am J Hum Genet       Date:  2016-03-24       Impact factor: 11.025

3.  The DAOA/G30 locus and affective disorders: haplotype based association study in a polydiagnostic approach.

Authors:  Micha Gawlik; Ingeborg Wehner; Meinhard Mende; Sven Jung; Bruno Pfuhlmann; Michael Knapp; Gerald Stöber
Journal:  BMC Psychiatry       Date:  2010-07-29       Impact factor: 3.630

4.  Key susceptibility locus for nonsyndromic cleft lip with or without cleft palate on chromosome 8q24.

Authors:  Stefanie Birnbaum; Kerstin U Ludwig; Heiko Reutter; Stefan Herms; Michael Steffens; Michele Rubini; Carlotta Baluardo; Melissa Ferrian; Nilma Almeida de Assis; Margrieta A Alblas; Sandra Barth; Jan Freudenberg; Carola Lauster; Gül Schmidt; Martin Scheer; Bert Braumann; Stefaan J Bergé; Rudolf H Reich; Franziska Schiefke; Alexander Hemprich; Simone Pötzsch; Regine P Steegers-Theunissen; Bernd Pötzsch; Susanne Moebus; Bernhard Horsthemke; Franz-Josef Kramer; Thomas F Wienker; Peter A Mossey; Peter Propping; Sven Cichon; Per Hoffmann; Michael Knapp; Markus M Nöthen; Elisabeth Mangold
Journal:  Nat Genet       Date:  2009-03-08       Impact factor: 38.330

5.  Power of association test for detecting minor histocompatibility gene causing graft-versus-host disease following bone marrow transplantation [correction].

Authors:  Jun Ohashi; Etsuko Maruya; Katsushi Tokunaga; Hiroh Saji
Journal:  J Hum Genet       Date:  2003-09-12       Impact factor: 3.172

6.  ZDHHC8 as a candidate gene for schizophrenia: analysis of a putative functional intronic marker in case-control and family-based association studies.

Authors:  Thomas Faul; Micha Gawlik; Martin Bauer; Sven Jung; Bruno Pfuhlmann; Burkhard Jabs; Michael Knapp; Gerald Stöber
Journal:  BMC Psychiatry       Date:  2005-10-14       Impact factor: 3.630

7.  A robust and efficient statistical method for genetic association studies using case and control samples from multiple cohorts.

Authors:  Minghui Wang; Lin Wang; Ning Jiang; Tianye Jia; Zewei Luo
Journal:  BMC Genomics       Date:  2013-02-08       Impact factor: 3.969

  7 in total

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