Literature DB >> 12416685

How to make large self-organizing maps for nonvectorial data.

Teuvo Kohonen1, Panu Somervuo.   

Abstract

The self-organizing map (SOM) represents an open set of input samples by a topologically organized, finite set of models. In this paper, a new version of the SOM is used for the clustering, organization, and visualization of a large database of symbol sequences (viz. protein sequences). This method combines two principles: the batch computing version of the SOM, and computation of the generalized median of symbol strings.

Mesh：

Year:  2002        PMID： 12416685     DOI： 10.1016/s0893-6080(02)00069-2

Source DB:  PubMed          Journal:  Neural Netw        ISSN： 0893-6080


  9 in total

1.  Functional connectivity-based parcellation of amygdala using self-organized mapping: a data driven approach.

Authors:  Arabinda Mishra; Baxter P Rogers; Li Min Chen; John C Gore
Journal:  Hum Brain Mapp       Date:  2013-02-18       Impact factor: 5.038

2.  Pair-wise Clustering of Large Scale Granger Causality Index Matrices for Revealing Communities.

Authors:  Axel Wismüller; Mahesh B Nagarajan; Herbert Witte; Britta Pester; Lutz Leistritz
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2014-03-13

3.  Conditional drug screening shows that mitotic inhibitors induce AKT/PKB-insensitive apoptosis.

Authors:  Maria Berndtsson; Emma Hernlund; Maria C Shoshan; Stig Linder
Journal:  J Chem Biol       Date:  2009-03-31

4.  SOMEA: self-organizing map based extraction algorithm for DNA motif identification with heterogeneous model.

Authors:  Nung Kion Lee; Dianhui Wang
Journal:  BMC Bioinformatics       Date:  2011-02-15       Impact factor: 3.169

5.  Integrative Metabolic Signatures for Hepatic Radiation Injury.

Authors:  Irwin Jack Kurland; Pilib Ó Broin; Aaron Golden; Gang Su; Fan Meng; Laibin Liu; Robert Mohney; Shilpa Kulkarni; Chandan Guha
Journal:  PLoS One       Date:  2015-06-05       Impact factor: 3.240

6.  MiRNATIP: a SOM-based miRNA-target interactions predictor.

Authors:  Antonino Fiannaca; Massimo La Rosa; Laura La Paglia; Riccardo Rizzo; Alfonso Urso
Journal:  BMC Bioinformatics       Date:  2016-09-22       Impact factor: 3.169

7.  Single-cell proteomics defines the cellular heterogeneity of localized prostate cancer.

Authors:  Laura De Vargas Roditi; Andrea Jacobs; Jan H Rueschoff; Pete Bankhead; Stéphane Chevrier; Hartland W Jackson; Thomas Hermanns; Christian D Fankhauser; Cedric Poyet; Felix Chun; Niels J Rupp; Alexandra Tschaebunin; Bernd Bodenmiller; Peter J Wild
Journal:  Cell Rep Med       Date:  2022-04-19

8.  Clinical phenotypes and outcomes associated with SARS-CoV-2 variant Omicron in critically ill French patients with COVID-19.

Authors:  Nicolas de Prost; Etienne Audureau; Nicholas Heming; Elyanne Gault; Tài Pham; Amal Chaghouri; Nina de Montmollin; Guillaume Voiriot; Laurence Morand-Joubert; Adrien Joseph; Marie-Laure Chaix; Sébastien Préau; Raphaël Favory; Aurélie Guigon; Charles-Edouard Luyt; Sonia Burrel; Julien Mayaux; Stéphane Marot; Damien Roux; Diane Descamps; Sylvie Meireles; Frédéric Pène; Flore Rozenberg; Damien Contou; Amandine Henry; Stéphane Gaudry; Ségolène Brichler; Jean-François Timsit; Antoine Kimmoun; Cédric Hartard; Louise-Marie Jandeaux; Samira Fafi-Kremer; Paul Gabarre; Malo Emery; Claudio Garcia-Sanchez; Sébastien Jochmans; Aurélia Pitsch; Djillali Annane; Elie Azoulay; Armand Mekontso Dessap; Christophe Rodriguez; Jean-Michel Pawlotsky; Slim Fourati
Journal:  Nat Commun       Date:  2022-10-12       Impact factor: 17.694

9.  Sexual dimorphism in epigenomic responses of stem cells to extreme fetal growth.

Authors:  Fabien Delahaye; N Ari Wijetunga; Hye J Heo; Jessica N Tozour; Yong Mei Zhao; John M Greally; Francine H Einstein
Journal:  Nat Commun       Date:  2014-10-10       Impact factor: 14.919
  9 in total

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