Literature DB >> 12414191

The meaning of it all: web-based resources for large-scale functional annotation and visualization of DNA microarray data.

Alessandro Guffanti1, James F Reid, Myriam Alcalay, Gyorgy Simon.   

Abstract

The vast amount of unstructured data emerging from the various genome projects has led to the development of a number of web-based tools designed to annotate genes with biological information. Here we discuss a selection of these tools with regards to their scope, limitations and ease of use.

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Year:  2002        PMID： 12414191     DOI： 10.1016/s0168-9525(02)02795-6

Source DB:  PubMed          Journal:  Trends Genet        ISSN： 0168-9525            Impact factor:   11.639


  3 in total

1.  A two-step strategy for detecting differential gene expression in cDNA microarray data.

Authors:  Yan Lu; Jun Zhu; Pengyuan Liu
Journal:  Curr Genet       Date:  2004-12-10       Impact factor: 3.886

2.  A transcriptional sketch of a primary human breast cancer by 454 deep sequencing.

Authors:  Alessandro Guffanti; Michele Iacono; Paride Pelucchi; Namshin Kim; Giulia Soldà; Larry J Croft; Ryan J Taft; Ermanno Rizzi; Marjan Askarian-Amiri; Raoul J Bonnal; Maurizio Callari; Flavio Mignone; Graziano Pesole; Giovanni Bertalot; Luigi Rossi Bernardi; Alberto Albertini; Christopher Lee; John S Mattick; Ileana Zucchi; Gianluca De Bellis
Journal:  BMC Genomics       Date:  2009-04-20       Impact factor: 3.969

3.  Evading the annotation bottleneck: using sequence similarity to search non-sequence gene data.

Authors:  Michael J Gilchrist; Mikkel B Christensen; Richard Harland; Nicolas Pollet; James C Smith; Naoto Ueno; Nancy Papalopulu
Journal:  BMC Bioinformatics       Date:  2008-10-17       Impact factor: 3.169
  3 in total

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