Literature DB >> 12398352

Clean SEA-HSQC: a method to map solvent exposed amides in large non-deuterated proteins with gradient-enhanced HSQC.

Donghai Lin1, Kong Hung Sze, Yangfang Cui, Guang Zhu.   

Abstract

The recent introduction of the SEA-TROSY experiment (Pellecchia et al. (2001) J. Am. Chem. Soc., 123, 4633-4634) can alleviate the problem of resonance overlap in 15N/2H labeled proteins. This method selectively observes solvent exposed amide protons with a SEA element. However, SEA-TROSY spectra may be contaminated with exchange-relayed NOE contributions from fast exchanging hydroxyl or amine protons and longitudinal relaxation contributions. Furthermore, for non-deuterated proteins or protein-ligand complexes, SEA-TROSY spectra may contain NOE contributions from aliphatic protons. In this communication, a modified version of the SEA element, a Clean SEA element, is introduced to eliminate these artifacts.

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Year:  2002        PMID: 12398352     DOI: 10.1023/a:1020225206644

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  8 in total

1.  SEA-TROSY (solvent exposed amides with TROSY): a method to resolve the problem of spectral overlap in very large proteins.

Authors:  M Pellecchia; D Meininger; A L Shen; R Jack; C B Kasper; D S Sem
Journal:  J Am Chem Soc       Date:  2001-05-16       Impact factor: 15.419

2.  Gradient and sensitivity enhancement of 2D TROSY with water flip-back, 3D NOESY-TROSY and TOCSY-TROSY experiments.

Authors:  G Zhu; X M Kong; K H Sze
Journal:  J Biomol NMR       Date:  1999-01       Impact factor: 2.835

Review 3.  Heteronuclear filters in two-dimensional [1H,1H]-NMR spectroscopy: combined use with isotope labelling for studies of macromolecular conformation and intermolecular interactions.

Authors:  G Otting; K Wüthrich
Journal:  Q Rev Biophys       Date:  1990-02       Impact factor: 5.318

4.  Separation of intramolecular NOE and exchange peaks in water exchange spectroscopy using spin-echo filters.

Authors:  S Mori; J M Berg; P C van Zijl
Journal:  J Biomol NMR       Date:  1996-01       Impact factor: 2.835

5.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

6.  Primary structure effects on peptide group hydrogen exchange.

Authors:  Y Bai; J S Milne; L Mayne; S W Englander
Journal:  Proteins       Date:  1993-09

7.  Measurement of amide proton exchange rates and NOEs with water in 13C/15N-enriched calcineurin B.

Authors:  S Grzesiek; A Bax
Journal:  J Biomol NMR       Date:  1993-11       Impact factor: 2.835

8.  Accurate quantitation of water-amide proton exchange rates using the phase-modulated CLEAN chemical EXchange (CLEANEX-PM) approach with a Fast-HSQC (FHSQC) detection scheme.

Authors:  T L Hwang; P C van Zijl; S Mori
Journal:  J Biomol NMR       Date:  1998-02       Impact factor: 2.835

  8 in total
  9 in total

1.  Heterogeneous binding of the SH3 client protein to the DnaK molecular chaperone.

Authors:  Jung Ho Lee; Dongyu Zhang; Christopher Hughes; Yusuke Okuno; Ashok Sekhar; Silvia Cavagnero
Journal:  Proc Natl Acad Sci U S A       Date:  2015-07-20       Impact factor: 11.205

2.  Lipid-mediated folding/unfolding of phospholamban as a regulatory mechanism for the sarcoplasmic reticulum Ca2+-ATPase.

Authors:  Martin Gustavsson; Nathaniel J Traaseth; Christine B Karim; Elizabeth L Lockamy; David D Thomas; Gianluigi Veglia
Journal:  J Mol Biol       Date:  2011-03-17       Impact factor: 5.469

3.  Characterization and structure determination of the Cdt1 binding domain of human minichromosome maintenance (Mcm) 6.

Authors:  Zhun Wei; Changdong Liu; Xing Wu; Naining Xu; Bo Zhou; Chun Liang; Guang Zhu
Journal:  J Biol Chem       Date:  2010-03-04       Impact factor: 5.157

4.  Phosphorylation of a PDZ domain extension modulates binding affinity and interdomain interactions in postsynaptic density-95 (PSD-95) protein, a membrane-associated guanylate kinase (MAGUK).

Authors:  Jun Zhang; Chad M Petit; David S King; Andrew L Lee
Journal:  J Biol Chem       Date:  2011-09-30       Impact factor: 5.157

5.  Solution structure of the ubiquitin-like domain of human DC-UbP from dendritic cells.

Authors:  Yong-Guang Gao; Ai-Xin Song; Yan-Hong Shi; Yong-Gang Chang; Shu-Xun Liu; Yi-Zi Yu; Xue-Tao Cao; Dong-Hai Lin; Hong-Yu Hu
Journal:  Protein Sci       Date:  2005-06-29       Impact factor: 6.725

6.  Intracellular trafficking of the KV1.3 potassium channel is regulated by the prodomain of a matrix metalloprotease.

Authors:  Hai M Nguyen; Charles A Galea; Galina Schmunk; Brian J Smith; Robert A Edwards; Raymond S Norton; K George Chandy
Journal:  J Biol Chem       Date:  2013-01-08       Impact factor: 5.157

7.  Solution structure of human myeloid-derived growth factor suggests a conserved function in the endoplasmic reticulum.

Authors:  Valeriu Bortnov; Marco Tonelli; Woonghee Lee; Ziqing Lin; Douglas S Annis; Omar N Demerdash; Alex Bateman; Julie C Mitchell; Ying Ge; John L Markley; Deane F Mosher
Journal:  Nat Commun       Date:  2019-12-09       Impact factor: 14.919

8.  The cooperative binding of TDP-43 to GU-rich RNA repeats antagonizes TDP-43 aggregation.

Authors:  Juan Carlos Rengifo-Gonzalez; Krystel El Hage; Marie-Jeanne Clément; Emilie Steiner; Vandana Joshi; Pierrick Craveur; Dominique Durand; David Pastré; Ahmed Bouhss
Journal:  Elife       Date:  2021-09-07       Impact factor: 8.140

Review 9.  NMR approaches in structure-based lead discovery: recent developments and new frontiers for targeting multi-protein complexes.

Authors:  David M Dias; Alessio Ciulli
Journal:  Prog Biophys Mol Biol       Date:  2014-08-28       Impact factor: 3.667

  9 in total

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