Literature DB >> 12396584

Divergence time and evolutionary rate estimation with multilocus data.

Jeffrey L Thorne1, Hirohisa Kishino.   

Abstract

Bayesian methods for estimating evolutionary divergence times are extended to multigene data sets, and a technique is described for detecting correlated changes in evolutionary rates among genes. Simulations are employed to explore the effect of multigene data on divergence time estimation, and the methodology is illustrated with a previously published data set representing diverse plant taxa. The fact that evolutionary rates and times are confounded when sequence data are compared is emphasized and the importance of fossil information for disentangling rates and times is stressed.

Mesh:

Year:  2002        PMID: 12396584     DOI: 10.1080/10635150290102456

Source DB:  PubMed          Journal:  Syst Biol        ISSN: 1063-5157            Impact factor:   15.683


  192 in total

1.  Evolution of the army ant syndrome: the origin and long-term evolutionary stasis of a complex of behavioral and reproductive adaptations.

Authors:  Seán G Brady
Journal:  Proc Natl Acad Sci U S A       Date:  2003-05-15       Impact factor: 11.205

Review 2.  The role of phylogenetics in comparative genetics.

Authors:  Douglas E Soltis; Pamela S Soltis
Journal:  Plant Physiol       Date:  2003-08       Impact factor: 8.340

3.  The molecular population genetics of HIV-1 group O.

Authors:  Philippe Lemey; Oliver G Pybus; Andrew Rambaut; Alexei J Drummond; David L Robertson; Pierre Roques; Michael Worobey; Anne-Mieke Vandamme
Journal:  Genetics       Date:  2004-07       Impact factor: 4.562

4.  Local molecular clocks in three nuclear genes: divergence times for rodents and other mammals and incompatibility among fossil calibrations.

Authors:  Emmanuel J P Douzery; Frédéric Delsuc; Michael J Stanhope; Dorothée Huchon
Journal:  J Mol Evol       Date:  2003       Impact factor: 2.395

5.  A dirichlet process prior for estimating lineage-specific substitution rates.

Authors:  Tracy A Heath; Mark T Holder; John P Huelsenbeck
Journal:  Mol Biol Evol       Date:  2011-11-02       Impact factor: 16.240

6.  Evidence for a convergent slowdown in primate molecular rates and its implications for the timing of early primate evolution.

Authors:  Michael E Steiper; Erik R Seiffert
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-02       Impact factor: 11.205

7.  Vertebrate time-tree elucidates the biogeographic pattern of a major biotic change around the K-T boundary in Madagascar.

Authors:  Angelica Crottini; Ole Madsen; Celine Poux; Axel Strauss; David R Vieites; Miguel Vences
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-19       Impact factor: 11.205

8.  A total-evidence approach to dating with fossils, applied to the early radiation of the hymenoptera.

Authors:  Fredrik Ronquist; Seraina Klopfstein; Lars Vilhelmsen; Susanne Schulmeister; Debra L Murray; Alexandr P Rasnitsyn
Journal:  Syst Biol       Date:  2012-06-20       Impact factor: 15.683

9.  Detecting gradients of asymmetry in site-specific substitutions in mitochondrial genomes.

Authors:  Neeraja M Krishnan; Hervè Seligmann; Sameer Z Raina; David D Pollock
Journal:  DNA Cell Biol       Date:  2004-10       Impact factor: 3.311

10.  Primate phylogenetic relationships and divergence dates inferred from complete mitochondrial genomes.

Authors:  Luca Pozzi; Jason A Hodgson; Andrew S Burrell; Kirstin N Sterner; Ryan L Raaum; Todd R Disotell
Journal:  Mol Phylogenet Evol       Date:  2014-02-28       Impact factor: 4.286

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