Literature DB >> 12393926

ACORN in CCP4 and its applications.

Jia Xing Yao1.   

Abstract

ACORN is a comprehensive and efficient phasing procedure for the determination of protein structures when atomic resolution data are available. Reliable phases can be developed from a fragment composed of a small percentage (less than 5%) of the scattering matter of the unit cell. For example, ACORN has been used to solve a structure of 1093 atoms from only one S atom. The map from ACORN typically reveals the 90% of whole structure. The initial model can be automatically built using ARP/wARP or QUANTA. ACORN can also be used to determine substructures of heavy atoms or anomalously scattering atoms from SAD or MAD data at much lower resolutions such as 3.5 A. Some test results of using ACORN on known structures are presented here. ACORN has solved four new protein structures by users in the UK and France, and some results kindly provided by them are described in this paper.

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Year:  2002        PMID: 12393926     DOI: 10.1107/s0907444902016621

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  5 in total

1.  Experimental phasing with SHELXC/D/E: combining chain tracing with density modification.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

2.  Purification, crystallization and preliminary X-ray analysis of the catalytic domain of the Escherichia coli tRNase colicin D.

Authors:  Kazutoshi Takahashi; Tetsuhiro Ogawa; Makoto Hidaka; Kanju Ohsawa; Haruhiko Masaki; Shunsuke Yajima
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2005-12-16

3.  Fragon: rapid high-resolution structure determination from ideal protein fragments.

Authors:  Huw T Jenkins
Journal:  Acta Crystallogr D Struct Biol       Date:  2018-03-02       Impact factor: 7.652

4.  Helical ensembles outperform ideal helices in molecular replacement.

Authors:  Filomeno Sánchez Rodríguez; Adam J Simpkin; Owen R Davies; Ronan M Keegan; Daniel J Rigden
Journal:  Acta Crystallogr D Struct Biol       Date:  2020-09-16       Impact factor: 7.652

Review 5.  Molecular replacement: tricks and treats.

Authors:  Chantal Abergel
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-10-12
  5 in total

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