Literature DB >> 12389814

Phylogenetic position of Gromia oviformis Dujardin inferred from nuclear-encoded small subunit ribosomal DNA.

Fabien Burki1, Cédric Berney, Jan Pawlowski.   

Abstract

Gromia oviformis Dujardin is a common marine protist characterised by a large, globular test and filose pseudopodia. First considered a foraminifer, Gromia was later placed within the Filosea and recently included among amoebae of uncertain affinities. In order to clarify the phylogenetic position of this genus, we sequenced the complete small-subunit ribosomal DNA gene of G. oviformis collected at five different geographic localities. The high divergence of obtained sequences suggests that G. oviformis is a species complex composed of several genetically distinct sibling species. Sequence analyses show Gromia to be a member of the Cercozoa, a heterogeneous assemblage which includes filose amoebae, the amoeboflagellate cercomonads, the chlorarachniophytes and the plasmodiophorid plant pathogens. Contrary to traditional classification, Gromia is not closely related to other testate filose amoebae (the Euglyphida), but seems to branch early among the Cercozoa. Our analyses also show a close relationship between the Cercozoa and the Acantharea. Because the Cercozoa are related to the Foraminifera based on other molecular data, we propose that most protists possessing filopodia, reticulopodia and axopodia have a common origin.

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Year:  2002        PMID: 12389814     DOI: 10.1078/1434-4610-00102

Source DB:  PubMed          Journal:  Protist        ISSN: 1434-4610


  7 in total

1.  The twilight of Heliozoa and rise of Rhizaria, an emerging supergroup of amoeboid eukaryotes.

Authors:  Sergey I Nikolaev; Cédric Berney; José F Fahrni; Ignacio Bolivar; Stephane Polet; Alexander P Mylnikov; Vladimir V Aleshin; Nikolai B Petrov; Jan Pawlowski
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-17       Impact factor: 11.205

2.  Revised small subunit rRNA analysis provides further evidence that Foraminifera are related to Cercozoa.

Authors:  Cédric Berney; Jan Pawlowski
Journal:  J Mol Evol       Date:  2003       Impact factor: 2.395

3.  Genetic relationships between desmothoracid heliozoa and gymnophryid amoebas as evidenced by comparison of the nucleotide sequences of 18S rRNA genes.

Authors:  S I Nikolaev; S Berney; J Fahrni; A P Mylnikov; N B Petrov; J Pawlowski
Journal:  Dokl Biol Sci       Date:  2003 Nov-Dec

4.  Structural diversity of eukaryotic 18S rRNA and its impact on alignment and phylogenetic reconstruction.

Authors:  Qiang Xie; Jinzhong Lin; Yan Qin; Jianfu Zhou; Wenjun Bu
Journal:  Protein Cell       Date:  2011-03-12       Impact factor: 14.870

5.  Multigene phylogeny and cell evolution of chromist infrakingdom Rhizaria: contrasting cell organisation of sister phyla Cercozoa and Retaria.

Authors:  Thomas Cavalier-Smith; Ema E Chao; Rhodri Lewis
Journal:  Protoplasma       Date:  2018-04-17       Impact factor: 3.356

6.  Broadly sampled multigene trees of eukaryotes.

Authors:  Hwan Su Yoon; Jessica Grant; Yonas I Tekle; Min Wu; Benjamin C Chaon; Jeffrey C Cole; John M Logsdon; David J Patterson; Debashish Bhattacharya; Laura A Katz
Journal:  BMC Evol Biol       Date:  2008-01-18       Impact factor: 3.260

7.  Phylogenomics reshuffles the eukaryotic supergroups.

Authors:  Fabien Burki; Kamran Shalchian-Tabrizi; Marianne Minge; Asmund Skjaeveland; Sergey I Nikolaev; Kjetill S Jakobsen; Jan Pawlowski
Journal:  PLoS One       Date:  2007-08-29       Impact factor: 3.240

  7 in total

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