Literature DB >> 12385634

A model for interphase chromosomes and evaluation of radiation-induced aberrations.

W R Holley1, I S Mian, S J Park, B Rydberg, A Chatterjee.   

Abstract

We have developed a theoretical model for evaluating radiation-induced chromosomal exchanges by explicitly taking into account interphase (G(0)/G(1)) chromosome structure, nuclear organization of chromosomes, the production of double-strand breaks (DSBs), and the subsequent rejoinings in a faithful or unfaithful manner. Each of the 46 chromosomes for human lymphocytes (40 chromosomes for mouse lymphocytes) is modeled as a random polymer inside a spherical volume. The chromosome spheres are packed randomly inside a spherical nucleus with an allowed overlap controlled by a parameter Omega. The rejoining of DSBs is determined by a Monte Carlo procedure using a Gaussian proximity function with an interaction range parameter sigma. Values of Omega and sigma have been found which yield calculated results of interchromosomal aberration frequencies that agree with a wide range of experimental data. Our preferred solution is one with an interaction range of 0.5 microm coupled with a relatively small overlap parameter of 0.675 microm, which more or less confirms previous estimates. We have used our model with these parameter values and with resolution or detectability limits to calculate yields of translocations and dicentrics for human lymphocytes exposed to low-LET radiation that agree with experiments in the dose range 0.09 to 4 Gy. Five different experimental data sets have been compared with the theoretical results. Essentially all of the experimental data fall between theoretical curves corresponding to resolution limits of 1 Mbp and 20 Mbp, which may reflect the fact that different investigators use different limits for sensitivity or detectability. Translocation yields for mouse lymphocytes have also been calculated and are in good agreement with experimental data from 1 cGy to 10 cGy. There is also good agreement with recent data on complex aberrations. Our model is expected to be applicable to both low- and high-LET radiation, and we include a sample prediction of the yield of interchromosomal rejoining in the dose range 0.22 Gy to 2 Gy of 1000 MeV/nucleon iron particles. This dose range corresponds to average particle traversals per nucleus ranging from 1.0 to 9.12.

Entities:  

Keywords:  NASA Discipline Radiation Health; Non-NASA Center

Mesh:

Year:  2002        PMID: 12385634     DOI: 10.1667/0033-7587(2002)158[0568:amfica]2.0.co;2

Source DB:  PubMed          Journal:  Radiat Res        ISSN: 0033-7587            Impact factor:   2.841


  11 in total

1.  Radial arrangement of chromosome territories in human cell nuclei: a computer model approach based on gene density indicates a probabilistic global positioning code.

Authors:  G Kreth; J Finsterle; J von Hase; M Cremer; C Cremer
Journal:  Biophys J       Date:  2004-05       Impact factor: 4.033

2.  Comparison of spatial chromosomal organization between bone marrow and peripheral blood in acute myeloid leukemia.

Authors:  Xueli Tian; Yanfang Wang; Yu Liu; Jun Yin; Dieyan Chen; Xiaoyan Ke; Wanyun Ma
Journal:  Oncol Lett       Date:  2018-07-27       Impact factor: 2.967

Review 3.  Spatial organization of genes as a component of regulated expression.

Authors:  Dave A Pai; David R Engelke
Journal:  Chromosoma       Date:  2009-08-30       Impact factor: 4.316

4.  Intermingling of chromosome territories in interphase suggests role in translocations and transcription-dependent associations.

Authors:  Miguel R Branco; Ana Pombo
Journal:  PLoS Biol       Date:  2006-04-25       Impact factor: 8.029

5.  The three-dimensional organization of telomeres in the nucleus of mammalian cells.

Authors:  Tony Chih Yuan Chuang; Sharareh Moshir; Yuval Garini; Alice Ya-Chun Chuang; Ian T Young; Bart Vermolen; Richard van den Doel; Virginie Mougey; Mathilde Perrin; Martina Braun; Paul Donald Kerr; Thierry Fest; Petra Boukamp; Sabine Mai
Journal:  BMC Biol       Date:  2004-06-03       Impact factor: 7.431

6.  In Silico Non-Homologous End Joining Following Ion Induced DNA Double Strand Breaks Predicts That Repair Fidelity Depends on Break Density.

Authors:  N T Henthorn; J W Warmenhoven; M Sotiropoulos; R I Mackay; N F Kirkby; K J Kirkby; M J Merchant
Journal:  Sci Rep       Date:  2018-02-08       Impact factor: 4.379

7.  Chromosome territory formation attenuates the translocation potential of cells.

Authors:  Leah F Rosin; Olivia Crocker; Randi L Isenhart; Son C Nguyen; Zhuxuan Xu; Eric F Joyce
Journal:  Elife       Date:  2019-11-04       Impact factor: 8.140

8.  Chromosome Folding Promotes Intrachromosomal Aberrations under Radiation- and Nuclease-Induced DNA Breakage.

Authors:  Yuri Eidelman; Ilya Salnikov; Svetlana Slanina; Sergey Andreev
Journal:  Int J Mol Sci       Date:  2021-11-10       Impact factor: 6.208

9.  Condensin II drives large-scale folding and spatial partitioning of interphase chromosomes in Drosophila nuclei.

Authors:  Leah F Rosin; Son C Nguyen; Eric F Joyce
Journal:  PLoS Genet       Date:  2018-07-12       Impact factor: 5.917

10.  Spatial inter-centromeric interactions facilitated the emergence of evolutionary new centromeres.

Authors:  Krishnendu Guin; Yao Chen; Radha Mishra; Siti Rawaidah Bm Muzaki; Bhagya C Thimmappa; Caoimhe E O'Brien; Geraldine Butler; Amartya Sanyal; Kaustuv Sanyal
Journal:  Elife       Date:  2020-05-29       Impact factor: 8.140

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