Literature DB >> 12376386

Genquire: genome annotation browser/editor.

M D Wilkinson1, D Block, W L Crosby.   

Abstract

UNLABELLED: We present a software package, Genquire, that allows visualization, querying, hand editing, and de novo markup of complete or partially annotated genomes. The system is written in Perl/Tk and uses, where possible, existing BioPerl data models and methods for representation and manipulation of the sequence and annotation objects. An adaptor API is provided to allow Genquire to display a wide range of databases and flat files, and a plugins API provides an interface to other sequence analysis software. AVAILABILITY: Genquire v3.03 is open-source software. The code is available for download and/or contribution at http://www.bioinformatics.org/Genquire

Mesh:

Year:  2002        PMID: 12376386     DOI: 10.1093/bioinformatics/18.10.1398

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  4 in total

1.  The Bioperl toolkit: Perl modules for the life sciences.

Authors:  Jason E Stajich; David Block; Kris Boulez; Steven E Brenner; Stephen A Chervitz; Chris Dagdigian; Georg Fuellen; James G R Gilbert; Ian Korf; Hilmar Lapp; Heikki Lehväslaiho; Chad Matsalla; Chris J Mungall; Brian I Osborne; Matthew R Pocock; Peter Schattner; Martin Senger; Lincoln D Stein; Elia Stupka; Mark D Wilkinson; Ewan Birney
Journal:  Genome Res       Date:  2002-10       Impact factor: 9.043

2.  Genomer--a Swiss army knife for genome scaffolding.

Authors:  Michael D Barton; Hazel A Barton
Journal:  PLoS One       Date:  2013-06-24       Impact factor: 3.240

3.  AGMIAL: implementing an annotation strategy for prokaryote genomes as a distributed system.

Authors:  K Bryson; V Loux; R Bossy; P Nicolas; S Chaillou; M van de Guchte; S Penaud; E Maguin; M Hoebeke; P Bessières; J-F Gibrat
Journal:  Nucleic Acids Res       Date:  2006-07-19       Impact factor: 16.971

4.  Current awareness on comparative and functional genomics.

Authors: 
Journal:  Comp Funct Genomics       Date:  2003
  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.