| Literature DB >> 12376386 |
M D Wilkinson1, D Block, W L Crosby.
Abstract
UNLABELLED: We present a software package, Genquire, that allows visualization, querying, hand editing, and de novo markup of complete or partially annotated genomes. The system is written in Perl/Tk and uses, where possible, existing BioPerl data models and methods for representation and manipulation of the sequence and annotation objects. An adaptor API is provided to allow Genquire to display a wide range of databases and flat files, and a plugins API provides an interface to other sequence analysis software. AVAILABILITY: Genquire v3.03 is open-source software. The code is available for download and/or contribution at http://www.bioinformatics.org/GenquireMesh:
Year: 2002 PMID: 12376386 DOI: 10.1093/bioinformatics/18.10.1398
Source DB: PubMed Journal: Bioinformatics ISSN: 1367-4803 Impact factor: 6.937