Literature DB >> 12372150

Variations in abundance: genome-wide responses to genetic variation and vice versa.

Bruce A Hamilton1.   

Abstract

How do naturally occurring polymorphisms in DNA sequence relate to variation in gene expression? Recent work to map genetic sources of expression variation has shown a surprising balance between cis and trans effects. Other work suggests some chromosomal clustering of genes by expression pattern. A synthesis of approaches may provide new insight in to adaptive mechanisms in evolution and the population basis of complex traits.

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Year:  2002        PMID: 12372150      PMCID: PMC244913          DOI: 10.1186/gb-2002-3-10-reviews1029

Source DB:  PubMed          Journal:  Genome Biol        ISSN: 1474-7596            Impact factor:   13.583


  17 in total

1.  Genome complexity reduction for SNP genotyping analysis.

Authors:  Barbara Jordan; Alain Charest; John F Dowd; Justin P Blumenstiel; Ru-fang Yeh Rf; Asiah Osman; David E Housman; John E Landers
Journal:  Proc Natl Acad Sci U S A       Date:  2002-03-05       Impact factor: 11.205

2.  Rapid gene mapping in Caenorhabditis elegans using a high density polymorphism map.

Authors:  S R Wicks; R T Yeh; W R Gish; R H Waterston; R H Plasterk
Journal:  Nat Genet       Date:  2001-06       Impact factor: 38.330

3.  Clustering of housekeeping genes provides a unified model of gene order in the human genome.

Authors:  Martin J Lercher; Araxi O Urrutia; Laurence D Hurst
Journal:  Nat Genet       Date:  2002-05-06       Impact factor: 38.330

4.  The structure of haplotype blocks in the human genome.

Authors:  Stacey B Gabriel; Stephen F Schaffner; Huy Nguyen; Jamie M Moore; Jessica Roy; Brendan Blumenstiel; John Higgins; Matthew DeFelice; Amy Lochner; Maura Faggart; Shau Neen Liu-Cordero; Charles Rotimi; Adebowale Adeyemo; Richard Cooper; Ryk Ward; Eric S Lander; Mark J Daly; David Altshuler
Journal:  Science       Date:  2002-05-23       Impact factor: 47.728

5.  Large-scale discovery and genotyping of single-nucleotide polymorphisms in the mouse.

Authors:  K Lindblad-Toh; E Winchester; M J Daly; D G Wang; J N Hirschhorn; J P Laviolette; K Ardlie; D E Reich; E Robinson; P Sklar; N Shah; D Thomas; J B Fan; T Gingeras; J Warrington; N Patil; T J Hudson; E S Lander
Journal:  Nat Genet       Date:  2000-04       Impact factor: 38.330

6.  Genetic mapping with SNP markers in Drosophila.

Authors:  J Berger; T Suzuki; K A Senti; J Stubbs; G Schaffner; B J Dickson
Journal:  Nat Genet       Date:  2001-12       Impact factor: 38.330

7.  Intra- and interspecific variation in primate gene expression patterns.

Authors:  Wolfgang Enard; Philipp Khaitovich; Joachim Klose; Sebastian Zöllner; Florian Heissig; Patrick Giavalisco; Kay Nieselt-Struwe; Elaine Muchmore; Ajit Varki; Rivka Ravid; Gaby M Doxiadis; Ronald E Bontrop; Svante Pääbo
Journal:  Science       Date:  2002-04-12       Impact factor: 47.728

8.  Genetic dissection of transcriptional regulation in budding yeast.

Authors:  Rachel B Brem; Gaël Yvert; Rebecca Clinton; Leonid Kruglyak
Journal:  Science       Date:  2002-03-28       Impact factor: 47.728

9.  Evidence for large domains of similarly expressed genes in the Drosophila genome.

Authors:  Paul T Spellman; Gerald M Rubin
Journal:  J Biol       Date:  2002-06-18

10.  Analysis of a human brain transcriptome map.

Authors:  Ping Qiu; Lawrence Benbow; Suxing Liu; Jonathan R Greene; Luquan Wang
Journal:  BMC Genomics       Date:  2002-04-16       Impact factor: 3.969

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  6 in total

1.  Prediction of cis-QTLs in a pair of inbred mouse strains with the use of expression and haplotype data from public databases.

Authors:  Richard A Radcliffe; Michael J Lee; Robert W Williams
Journal:  Mamm Genome       Date:  2006-06-12       Impact factor: 2.957

2.  Centromere Satellite Repeats Have Undergone Rapid Changes in Polyploid Wheat Subgenomes.

Authors:  Handong Su; Yalin Liu; Chang Liu; Qinghua Shi; Yuhong Huang; Fangpu Han
Journal:  Plant Cell       Date:  2019-07-16       Impact factor: 11.277

3.  Modelling the correlation between the activities of adjacent genes in Drosophila.

Authors:  Helene H Thygesen; Aeilko H Zwinderman
Journal:  BMC Bioinformatics       Date:  2005-01-19       Impact factor: 3.169

Review 4.  Bench-to-bedside review: Association of genetic variation with sepsis.

Authors:  Ainsley M Sutherland; Keith R Walley
Journal:  Crit Care       Date:  2009-04-29       Impact factor: 9.097

5.  Genetic variation and its role in malignancy.

Authors:  Bente A Talseth-Palmer; Rodney J Scott
Journal:  Int J Biomed Sci       Date:  2011-09

6.  Genomic variation within alpha satellite DNA influences centromere location on human chromosomes with metastable epialleles.

Authors:  Megan E Aldrup-MacDonald; Molly E Kuo; Lori L Sullivan; Kimberline Chew; Beth A Sullivan
Journal:  Genome Res       Date:  2016-08-10       Impact factor: 9.043

  6 in total

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