Literature DB >> 12370010

Protein synthesis at atomic resolution: mechanistics of translation in the light of highly resolved structures for the ribosome.

Daniel N Wilson1, Gregor Blaha, Sean R Connell, Pavel V Ivanov, Holger Jenke, Ulrich Stelzl, Yoshika Teraoka, Knud H Nierhaus.   

Abstract

Our understanding of the process of translation has progressed rapidly since the availability of highly resolved structures for the ribosome. A wealth of information has emerged in terms of both RNA and protein structure and the interplay between them. This has prompted us to revisit the astonishing "treasure trove" of functional data regarding the ribosome that has accumulated over the past decades. Here we try a systematic synopsis of these ribosomal functions in light of the cryo-electron microscopic structures (resolution >7 A) and the atomic x-ray structures (>2.4 A) of the ribosome.

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Year:  2002        PMID: 12370010     DOI: 10.2174/1389203023380846

Source DB:  PubMed          Journal:  Curr Protein Pept Sci        ISSN: 1389-2037            Impact factor:   3.272


  19 in total

1.  EF-G-independent reactivity of a pre-translocation-state ribosome complex with the aminoacyl tRNA substrate puromycin supports an intermediate (hybrid) state of tRNA binding.

Authors:  Divya Sharma; Daniel R Southworth; Rachel Green
Journal:  RNA       Date:  2004-01       Impact factor: 4.942

Review 2.  Termination of translation: interplay of mRNA, rRNAs and release factors?

Authors:  Lev Kisselev; Måns Ehrenberg; Ludmila Frolova
Journal:  EMBO J       Date:  2003-01-15       Impact factor: 11.598

Review 3.  Protein folding.

Authors:  M A Basharov
Journal:  J Cell Mol Med       Date:  2003 Jul-Sep       Impact factor: 5.310

4.  tRNA dynamics on the ribosome during translation.

Authors:  Scott C Blanchard; Harold D Kim; Ruben L Gonzalez; Joseph D Puglisi; Steven Chu
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-18       Impact factor: 11.205

Review 5.  Initiation of protein synthesis in bacteria.

Authors:  Brian Søgaard Laursen; Hans Peter Sørensen; Kim Kusk Mortensen; Hans Uffe Sperling-Petersen
Journal:  Microbiol Mol Biol Rev       Date:  2005-03       Impact factor: 11.056

6.  Generation of chemically engineered ribosomes for atomic mutagenesis studies on protein biosynthesis.

Authors:  Matthias D Erlacher; Anna Chirkova; Paul Voegele; Norbert Polacek
Journal:  Nat Protoc       Date:  2011-04-07       Impact factor: 13.491

7.  Hydration shells of molecules in molecular association: A mechanism for biomolecular recognition.

Authors:  Valery I Lim; James F Curran; Maria B Garber
Journal:  J Theor Biol       Date:  2012-02-17       Impact factor: 2.691

8.  A highly purified, fluorescently labeled in vitro translation system for single-molecule studies of protein synthesis.

Authors:  Jingyi Fei; Jiangning Wang; Samuel H Sternberg; Daniel D MacDougall; Margaret M Elvekrog; Dileep K Pulukkunat; Michael T Englander; Ruben L Gonzalez
Journal:  Methods Enzymol       Date:  2010       Impact factor: 1.600

Review 9.  A new view of protein synthesis: mapping the free energy landscape of the ribosome using single-molecule FRET.

Authors:  James B Munro; Andrea Vaiana; Kevin Y Sanbonmatsu; Scott C Blanchard
Journal:  Biopolymers       Date:  2008-07       Impact factor: 2.505

Review 10.  Versatility of aminoglycosides and prospects for their future.

Authors:  Sergei B Vakulenko; Shahriar Mobashery
Journal:  Clin Microbiol Rev       Date:  2003-07       Impact factor: 26.132

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