Literature DB >> 12323370

Two decades of RNA catalysis.

Victoria J DeRose1.   

Abstract

Twenty years have passed since the initial discovery of catalytic RNA. Although initial discoveries of ribozymes (RNA enzymes) involved phosphoryl transfer reactions on RNA substrates, our knowledge of the biological repertoire of these enzymes was expanded recently as a result of new evidence suggesting that the RNA component of the ribosome catalyzes peptide bond formation. Ribozymes have posed novel challenges for mechanistic studies, but recent investigations have yielded increasing support for chemical mechanisms involving precisely positioned nucleic acid bases with environmentally perturbed pKa values and metal ions. A continuing challenge for RNA enzymologists is the separation of the structural and chemical effects in interpreting experimental results, a challenge that will be overcome as the intriguing fields of RNA enzymology and structural biology continue to expand.

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Year:  2002        PMID: 12323370     DOI: 10.1016/s1074-5521(02)00217-x

Source DB:  PubMed          Journal:  Chem Biol        ISSN: 1074-5521


  13 in total

1.  Characterization of a native hammerhead ribozyme derived from schistosomes.

Authors:  Edith M Osborne; Janell E Schaak; Victoria J Derose
Journal:  RNA       Date:  2005-02       Impact factor: 4.942

2.  Ribozymes: analytical solution of the one-substrate, two-intermediate reversible scheme for enzyme reactions.

Authors:  Paolo Toti; Ludovico Sbordone; Carolina Sbordone; Carlo Bauer
Journal:  J Biol Phys       Date:  2007-01-27       Impact factor: 1.365

3.  Modulation of RNA metal binding by flanking bases: 15N NMR evaluation of GC, tandem GU, and tandem GA sites.

Authors:  Weimin Wang; Jianwei Zhao; Qianwei Han; Gang Wang; Gengcheng Yang; Anthony J Shallop; Jane Liu; Barbara L Gaffney; Roger A Jones
Journal:  Nucleosides Nucleotides Nucleic Acids       Date:  2009-05       Impact factor: 1.381

4.  RNA-Redesign: a web server for fixed-backbone 3D design of RNA.

Authors:  Joseph D Yesselman; Rhiju Das
Journal:  Nucleic Acids Res       Date:  2015-05-11       Impact factor: 16.971

5.  The structure and synthetic capabilities of a catalytic peptide formed by substrate-directed mechanism--implications to prebiotic catalysis.

Authors:  Gideon Fleminger; Tal Yaron; Miriam Eisenstein; Akiva Bar-Nun
Journal:  Orig Life Evol Biosph       Date:  2005-08       Impact factor: 1.950

6.  Improvement of RNA secondary structure prediction using RNase H cleavage and randomized oligonucleotides.

Authors:  Andrew D Kauffmann; Ryan J Campagna; Chantal B Bartels; Jessica L Childs-Disney
Journal:  Nucleic Acids Res       Date:  2009-07-13       Impact factor: 16.971

7.  Characterizing multiple metal ion binding sites within a ribozyme by cadmium-induced EPR silencing.

Authors:  Natalia Kisseleva; Stefanie Kraut; Andres Jäschke; Olav Schiemann
Journal:  HFSP J       Date:  2007-07-27

8.  Chemical engineering of the peptidyl transferase center reveals an important role of the 2'-hydroxyl group of A2451.

Authors:  Matthias D Erlacher; Kathrin Lang; Nisha Shankaran; Brigitte Wotzel; Alexander Hüttenhofer; Ronald Micura; Alexander S Mankin; Norbert Polacek
Journal:  Nucleic Acids Res       Date:  2005-03-14       Impact factor: 16.971

Review 9.  Small and Random Peptides: An Unexplored Reservoir of Potentially Functional Primitive Organocatalysts. The Case of Seryl-Histidine.

Authors:  Rafal Wieczorek; Katarzyna Adamala; Tecla Gasperi; Fabio Polticelli; Pasquale Stano
Journal:  Life (Basel)       Date:  2017-04-09

Review 10.  Nucleic acid catalysis: metals, nucleobases, and other cofactors.

Authors:  W Luke Ward; Kory Plakos; Victoria J DeRose
Journal:  Chem Rev       Date:  2014-04-14       Impact factor: 60.622

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