Literature DB >> 12323136

The effects of dissolved oxygen upon amide proton relaxation and chemical shift in a perdeuterated protein.

Tobias S Ulmer1, Iain D Campbell, Jonathan Boyd.   

Abstract

The effects of dissolved molecular oxygen upon amide proton ((1)H(N)) longitudinal and transverse relaxation rates and chemical shifts were studied for a small protein domain, the second type 2 module of fibronectin ((2)F2)-isotopically enriched to 99% (2)H, 98% (15)N. Longitudinal relaxation rate enhancements, R(O(2))((1)H(N)), of individual backbone (1)H(N) nuclei varied up to 14 fold between a degassed and oxygenated (1 bar) solution, indicating that the oxygen distribution within the protein is inhomogeneous. On average, smaller relaxation rate enhancements were observed for (1)H(N) nuclei associated with the core of the protein compared to (1)H(N) nuclei closer to the surface, suggesting restricted oxygen accessibility to some regions. In agreement with an O(2)-(1)H(N) hyperfine interaction in the extreme narrowing limit, the (1)H(N) transverse relaxation rates showed no significant change, up to an oxygen pressure of 9.5 bar (the maximum pressure used in this study). For most (1)H(N) resonances, small deltadelta(O(2))((1)H(N)) hyperfine chemical shifts could be detected between oxygen pressures of 1 bar and 9.5 bar.

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Year:  2002        PMID: 12323136     DOI: 10.1006/jmre.2002.2585

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.229


  4 in total

1.  Analysis of O2-binding Sites in Proteins Using Gas-Pressure NMR Spectroscopy: Outer Surface Protein A.

Authors:  Takahiro Kawamura; Takuro Wakamoto; Soichiro Kitazawa; Shun Sakuraba; Tomoshi Kameda; Ryo Kitahara
Journal:  Biophys J       Date:  2017-05-09       Impact factor: 4.033

2.  Nuclear magnetic resonance-based determination of dioxygen binding sites in protein cavities.

Authors:  Ryo Kitahara; Shun Sakuraba; Tomoshi Kameda; Sanshiro Okuda; Mengjun Xue; Frans A A Mulder
Journal:  Protein Sci       Date:  2018-01-25       Impact factor: 6.725

3.  Probing protein-peptide binding surfaces using charged stable free radicals and transverse paramagnetic relaxation enhancement (PRE).

Authors:  Michaël L Deschamps; Ewa S Pilka; Jennifer R Potts; Iain D Campbell; Jonathan Boyd
Journal:  J Biomol NMR       Date:  2005-02       Impact factor: 2.835

4.  Detecting O2 binding sites in protein cavities.

Authors:  Ryo Kitahara; Yuichi Yoshimura; Mengjun Xue; Tomoshi Kameda; Frans A A Mulder
Journal:  Sci Rep       Date:  2016-02-02       Impact factor: 4.379

  4 in total

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