Literature DB >> 12270902

Asymmetric functional divergence of duplicate genes in yeast.

Andreas Wagner1.   

Abstract

Most duplicate genes are eliminated from a genome shortly after duplication, but those that remain are an important source of biochemical diversity. Here, I present evidence from genome-scale protein-protein interaction data, microarray expression data, and large-scale gene knockout data that this diversification is often asymmetrical: one duplicate usually shows significantly more molecular or genetic interactions than the other. I propose a model that can explain this divergence pattern if asymmetrically diverging duplicate gene pairs show increased robustness to deleterious mutations.

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Year:  2002        PMID: 12270902     DOI: 10.1093/oxfordjournals.molbev.a003998

Source DB:  PubMed          Journal:  Mol Biol Evol        ISSN: 0737-4038            Impact factor:   16.240


  61 in total

1.  Asymmetric sequence divergence of duplicate genes.

Authors:  Gavin C Conant; Andreas Wagner
Journal:  Genome Res       Date:  2003-09       Impact factor: 9.043

2.  Molecular population genetics of the beta-esterase gene cluster of Drosophila melanogaster.

Authors:  Evgeniy S Balakirev; Francisco J Ayala
Journal:  J Genet       Date:  2003-12       Impact factor: 1.166

3.  Duplicate genes and robustness to transient gene knock-downs in Caenorhabditis elegans.

Authors:  Gavin C Conant; Andreas Wagner
Journal:  Proc Biol Sci       Date:  2004-01-07       Impact factor: 5.349

4.  Improving evolutionary models of protein interaction networks.

Authors:  Todd A Gibson; Debra S Goldberg
Journal:  Bioinformatics       Date:  2010-11-09       Impact factor: 6.937

5.  Rapid subfunctionalization accompanied by prolonged and substantial neofunctionalization in duplicate gene evolution.

Authors:  Xionglei He; Jianzhi Zhang
Journal:  Genetics       Date:  2005-01-16       Impact factor: 4.562

6.  A central role of Arabidopsis thaliana ovate family proteins in networking and subcellular localization of 3-aa loop extension homeodomain proteins.

Authors:  Jana Hackbusch; Klaus Richter; Judith Müller; Francesco Salamini; Joachim F Uhrig
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-21       Impact factor: 11.205

7.  Following tetraploidy in an Arabidopsis ancestor, genes were removed preferentially from one homeolog leaving clusters enriched in dose-sensitive genes.

Authors:  Brian C Thomas; Brent Pedersen; Michael Freeling
Journal:  Genome Res       Date:  2006-06-07       Impact factor: 9.043

8.  Arabidopsis intragenomic conserved noncoding sequence.

Authors:  Brian C Thomas; Lakshmi Rapaka; Eric Lyons; Brent Pedersen; Michael Freeling
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-14       Impact factor: 11.205

9.  How the global structure of protein interaction networks evolves.

Authors:  Andreas Wagner
Journal:  Proc Biol Sci       Date:  2003-03-07       Impact factor: 5.349

10.  Function relaxation followed by diversifying selection after whole-genome duplication in flowering plants.

Authors:  Hui Guo; Tae-Ho Lee; Xiyin Wang; Andrew H Paterson
Journal:  Plant Physiol       Date:  2013-04-11       Impact factor: 8.340

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