Literature DB >> 12238589

Order-parameter tensor description of HPr in a medium of oriented bicelles.

Franciska van Lune1, Linda Manning, Klaas Dijkstra, Herman J C Berendsen, Ruud M Scheek.   

Abstract

Residual dipolar couplings between 15N and 1H nuclear spins in HPr were used to determine the protein's orientation in a medium of bicelles, oriented by a magnetic field. In the case of wild-type HPr the protein's non-spherical shape can explain its orientation in this medium. In the case of the F48W mutant it was found that at least one other mechanism contributes to the observed orientation of the protein, to a degree that depends on the concentration of phosphate ions in the medium. We propose that the F48W mutant has a weak affinity towards the bicelle-surfaces that decreases with increasing phosphate concentrations. We used an order-parameter description to analyse this situation and to determine the axis of main order and the sign of the order parameter pertaining to this additional orientation mechanism.

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Year:  2002        PMID: 12238589     DOI: 10.1023/a:1019877830921

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  13 in total

1.  Domain orientation and dynamics in multidomain proteins from residual dipolar couplings.

Authors:  M W Fischer; J A Losonczi; J L Weaver; J H Prestegard
Journal:  Biochemistry       Date:  1999-07-13       Impact factor: 3.162

2.  Variation of molecular alignment as a means of resolving orientational ambiguities in protein structures from dipolar couplings.

Authors:  H M Al-Hashimi; H Valafar; M Terrell; E R Zartler; M K Eidsness; J H Prestegard
Journal:  J Magn Reson       Date:  2000-04       Impact factor: 2.229

3.  Rapid determination of protein folds using residual dipolar couplings.

Authors:  C A Fowler; F Tian; H M Al-Hashimi; J H Prestegard
Journal:  J Mol Biol       Date:  2000-12-01       Impact factor: 5.469

4.  A general method for rapid site-directed mutagenesis using the polymerase chain reaction.

Authors:  O Landt; H P Grunert; U Hahn
Journal:  Gene       Date:  1990-11-30       Impact factor: 3.688

5.  Effect of phosphorylation on hydrogen-bonding interactions of the active site histidine of the phosphocarrier protein HPr of the phosphoenolpyruvate-dependent phosphotransferase system determined by 15N NMR spectroscopy.

Authors:  A A van Dijk; L C de Lange; W W Bachovchin; G T Robillard
Journal:  Biochemistry       Date:  1990-09-04       Impact factor: 3.162

6.  Analysis of the role of interfacial tryptophan residues in controlling the topology of membrane proteins.

Authors:  A N Ridder; S Morein; J G Stam; A Kuhn; B de Kruijff; J A Killian
Journal:  Biochemistry       Date:  2000-05-30       Impact factor: 3.162

7.  Pegylation of magnetically oriented lipid bilayers.

Authors:  V King; M Parker; K P Howard
Journal:  J Magn Reson       Date:  2000-01       Impact factor: 2.229

8.  Expression of the ptsH+ gene of Escherichia coli cloned on plasmid pBR322. A convenient means for obtaining the histidine-containing carrier protein HPr.

Authors:  L G Lee; P Britton; F Parra; A Boronat; H Kornberg
Journal:  FEBS Lett       Date:  1982-11-29       Impact factor: 4.124

9.  Order matrix analysis of residual dipolar couplings using singular value decomposition.

Authors:  J A Losonczi; M Andrec; M W Fischer; J H Prestegard
Journal:  J Magn Reson       Date:  1999-06       Impact factor: 2.229

10.  Characterization of magnetically oriented phospholipid micelles for measurement of dipolar couplings in macromolecules.

Authors:  M Ottiger; A Bax
Journal:  J Biomol NMR       Date:  1998-10       Impact factor: 2.835

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  2 in total

1.  Determination of structural fluctuations of proteins from structure-based calculations of residual dipolar couplings.

Authors:  Rinaldo W Montalvao; Alfonso De Simone; Michele Vendruscolo
Journal:  J Biomol NMR       Date:  2012-06-23       Impact factor: 2.835

Review 2.  New opportunities for tensor-free calculations of residual dipolar couplings for the study of protein dynamics.

Authors:  Rinaldo Montalvao; Carlo Camilloni; Alfonso De Simone; Michele Vendruscolo
Journal:  J Biomol NMR       Date:  2014-01-30       Impact factor: 2.835

  2 in total

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