Literature DB >> 12235397

Rapid gene cloning using terminator primers and modular vectors.

William F Donahue1, Brian M Turczyk, Kevin A Jarrell.   

Abstract

We seek to create useful biological diversity by exploiting the modular nature of genetic information. In this report we describe experiments that focus on the modular nature of plasmid cloning vectors. Bacterial plasmids are modular entities composed of origins of replication, selectable markers and other components. We describe a new ligation-independent cloning method that allows for rapid and seamless assembly of vectors from component modules. We further demonstrate that gene cloning can be accomplished simultaneously with assembly of a modular vector. This approach provides considerable flexibility as it allows for 'menu driven' cloning of genes into custom assembled modular vectors.

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Year:  2002        PMID: 12235397      PMCID: PMC137120          DOI: 10.1093/nar/gnf094

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  11 in total

1.  A read-ahead function in archaeal DNA polymerases detects promutagenic template-strand uracil.

Authors:  M A Greagg; M J Fogg; G Panayotou; S J Evans; B A Connolly; L H Pearl
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-03       Impact factor: 11.205

2.  Importance of terminal base pair hydrogen-bonding in 3'-end proofreading by the Klenow fragment of DNA polymerase I.

Authors:  J C Morales; E T Kool
Journal:  Biochemistry       Date:  2000-03-14       Impact factor: 3.162

3.  Seamless gene engineering using RNA- and DNA-overhang cloning.

Authors:  V W Coljee; H L Murray; W F Donahue; K A Jarrell
Journal:  Nat Biotechnol       Date:  2000-07       Impact factor: 54.908

4.  Ligation-independent cloning of PCR products (LIC-PCR).

Authors:  C Aslanidis; P J de Jong
Journal:  Nucleic Acids Res       Date:  1990-10-25       Impact factor: 16.971

Review 5.  Fidelity mechanisms in DNA replication.

Authors:  H Echols; M F Goodman
Journal:  Annu Rev Biochem       Date:  1991       Impact factor: 23.643

Review 6.  Thermostable DNA polymerases.

Authors:  F B Perler; S Kumar; H Kong
Journal:  Adv Protein Chem       Date:  1996

7.  Dynamics of bacteriophage T4 DNA polymerase function: identification of amino acid residues that affect switching between polymerase and 3' --> 5' exonuclease activities.

Authors:  S A Stocki; R L Nonay; L J Reha-Krantz
Journal:  J Mol Biol       Date:  1995-11-17       Impact factor: 5.469

8.  The 3' --> 5' exonuclease of T4 DNA polymerase removes premutagenic alkyl mispairs and contributes to futile cycling at O6-methylguanine lesions.

Authors:  V Khare; K A Eckert
Journal:  J Biol Chem       Date:  2001-04-04       Impact factor: 5.157

9.  The proofreading pathway of bacteriophage T4 DNA polymerase.

Authors:  L J Reha-Krantz; L A Marquez; E Elisseeva; R P Baker; L B Bloom; H B Dunford; M F Goodman
Journal:  J Biol Chem       Date:  1998-09-04       Impact factor: 5.157

10.  Minimal length requirement of the single-stranded tails for ligation-independent cloning (LIC) of PCR products.

Authors:  C Aslanidis; P J de Jong; G Schmitz
Journal:  PCR Methods Appl       Date:  1994-12
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  14 in total

1.  DNA charge transport as a first step in coordinating the detection of lesions by repair proteins.

Authors:  Pamela A Sontz; Timothy P Mui; Jill O Fuss; John A Tainer; Jacqueline K Barton
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-23       Impact factor: 11.205

Review 2.  A discussion of molecular biology methods for protein engineering.

Authors:  Alexander Zawaira; Anil Pooran; Samantha Barichievy; Denis Chopera
Journal:  Mol Biotechnol       Date:  2012-05       Impact factor: 2.695

3.  Redox signaling between DNA repair proteins for efficient lesion detection.

Authors:  Amie K Boal; Joseph C Genereux; Pamela A Sontz; Jeffrey A Gralnick; Dianne K Newman; Jacqueline K Barton
Journal:  Proc Natl Acad Sci U S A       Date:  2009-08-31       Impact factor: 11.205

4.  The terminal 5' phosphate and proximate phosphorothioate promote ligation-independent cloning.

Authors:  Xi-Peng Liu; Jian-Hua Liu
Journal:  Protein Sci       Date:  2010-05       Impact factor: 6.725

5.  Mutants of the base excision repair glycosylase, endonuclease III: DNA charge transport as a first step in lesion detection.

Authors:  Christine A Romano; Pamela A Sontz; Jacqueline K Barton
Journal:  Biochemistry       Date:  2011-06-09       Impact factor: 3.162

6.  Rapid hierarchical assembly of medium-size DNA cassettes.

Authors:  Jonathan Leo Schmid-Burgk; Zhen Xie; Stefan Frank; Sebastian Virreira Winter; Sibylle Mitschka; Waldemar Kolanus; Andrew Murray; Yaakov Benenson
Journal:  Nucleic Acids Res       Date:  2012-03-15       Impact factor: 16.971

7.  Crystal engineering of HIV-1 reverse transcriptase for structure-based drug design.

Authors:  Joseph D Bauman; Kalyan Das; William C Ho; Mukta Baweja; Daniel M Himmel; Arthur D Clark; Deena A Oren; Paul L Boyer; Stephen H Hughes; Aaron J Shatkin; Eddy Arnold
Journal:  Nucleic Acids Res       Date:  2008-08-01       Impact factor: 16.971

8.  Description of a PCR-based technique for DNA splicing and mutagenesis by producing 5' overhangs with run through stop DNA synthesis utilizing Ara-C.

Authors:  Menachem Ailenberg; Neil M Goldenberg; Mel Silverman
Journal:  BMC Biotechnol       Date:  2005-09-01       Impact factor: 2.563

9.  Single tube, high throughput cloning of inverted repeat constructs for double-stranded RNA expression.

Authors:  Brian Hauge; Christopher Oggero; Nicole Nguyen; Changlin Fu; Fenggao Dong
Journal:  PLoS One       Date:  2009-09-28       Impact factor: 3.240

10.  The MASTER (methylation-assisted tailorable ends rational) ligation method for seamless DNA assembly.

Authors:  Wei-Hua Chen; Zhong-Jun Qin; Jin Wang; Guo-Ping Zhao
Journal:  Nucleic Acids Res       Date:  2013-02-26       Impact factor: 16.971

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