Literature DB >> 12231624

Multiple regulatory changes contribute to the evolution of the Caenorhabditis lin-48 ovo gene.

Xiaodong Wang1, Helen M Chamberlin.   

Abstract

Recent work points to the importance of changes in gene expression patterns in species-specific differences. Here, we investigate the evolution of the nematode lin-48 ovo gene. lin-48 is expressed in several cells in both Caenorhabditis elegans and Caenorhabditis briggsae, but acts in the excretory duct cell only in C. elegans. We find the differences result both from alterations in the cis-regulatory sequences and in proteins that mediate lin-48 expression. One factor that contributes to the species differences is the bZip protein CES-2. Our results indicate the accumulation of several regulatory changes affecting one gene can contribute to evolutionary change.

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Year:  2002        PMID: 12231624      PMCID: PMC187439          DOI: 10.1101/gad.996302

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  13 in total

1.  Evidence for stabilizing selection in a eukaryotic enhancer element.

Authors:  M Z Ludwig; C Bergman; N H Patel; M Kreitman
Journal:  Nature       Date:  2000-02-03       Impact factor: 49.962

2.  Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans.

Authors:  A Fire; S Xu; M K Montgomery; S A Kostas; S E Driver; C C Mello
Journal:  Nature       Date:  1998-02-19       Impact factor: 49.962

3.  MatInd and MatInspector: new fast and versatile tools for detection of consensus matches in nucleotide sequence data.

Authors:  K Quandt; K Frech; H Karas; E Wingender; T Werner
Journal:  Nucleic Acids Res       Date:  1995-12-11       Impact factor: 16.971

4.  Functional comparison of the nematode Hox gene lin-39 in C. elegans and P. pacificus reveals evolutionary conservation of protein function despite divergence of primary sequences.

Authors:  K Grandien; R J Sommer
Journal:  Genes Dev       Date:  2001-08-15       Impact factor: 11.361

5.  Transcriptional regulator of programmed cell death encoded by Caenorhabditis elegans gene ces-2.

Authors:  M M Metzstein; M O Hengartner; N Tsung; R E Ellis; H R Horvitz
Journal:  Nature       Date:  1996-08-08       Impact factor: 49.962

6.  The C. elegans cell death specification gene ces-1 encodes a snail family zinc finger protein.

Authors:  M M Metzstein; H R Horvitz
Journal:  Mol Cell       Date:  1999-09       Impact factor: 17.970

Review 7.  The hardwiring of development: organization and function of genomic regulatory systems.

Authors:  M I Arnone; E H Davidson
Journal:  Development       Date:  1997-05       Impact factor: 6.868

8.  Fine structure of the Caenorhabditis elegans secretory-excretory system.

Authors:  F K Nelson; P S Albert; D L Riddle
Journal:  J Ultrastruct Res       Date:  1983-02

9.  EGL-38 Pax regulates the ovo-related gene lin-48 during Caenorhabditis elegans organ development.

Authors:  A D Johnson; D Fitzsimmons; J Hagman; H M Chamberlin
Journal:  Development       Date:  2001-08       Impact factor: 6.868

10.  Two C. elegans genes control the programmed deaths of specific cells in the pharynx.

Authors:  R E Ellis; H R Horvitz
Journal:  Development       Date:  1991-06       Impact factor: 6.868

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  28 in total

1.  The Nkx5/HMX homeodomain protein MLS-2 is required for proper tube cell shape in the C. elegans excretory system.

Authors:  Ishmail Abdus-Saboor; Craig E Stone; John I Murray; Meera V Sundaram
Journal:  Dev Biol       Date:  2012-04-17       Impact factor: 3.582

2.  Emerging principles of regulatory evolution.

Authors:  Benjamin Prud'homme; Nicolas Gompel; Sean B Carroll
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-09       Impact factor: 11.205

3.  Ovol1 regulates meiotic pachytene progression during spermatogenesis by repressing Id2 expression.

Authors:  Baoan Li; Mahalakshmi Nair; Douglas R Mackay; Virginia Bilanchone; Ming Hu; Magid Fallahi; Hanqiu Song; Qian Dai; Paula E Cohen; Xing Dai
Journal:  Development       Date:  2005-02-16       Impact factor: 6.868

4.  Tubular Excretory Canal Structure Depends on Intermediate Filaments EXC-2 and IFA-4 in Caenorhabditis elegans.

Authors:  Hikmat Al-Hashimi; David H Hall; Brian D Ackley; Erik A Lundquist; Matthew Buechner
Journal:  Genetics       Date:  2018-06-26       Impact factor: 4.562

Review 5.  From "the Worm" to "the Worms" and Back Again: The Evolutionary Developmental Biology of Nematodes.

Authors:  Eric S Haag; David H A Fitch; Marie Delattre
Journal:  Genetics       Date:  2018-10       Impact factor: 4.562

Review 6.  The Caenorhabditis elegans Excretory System: A Model for Tubulogenesis, Cell Fate Specification, and Plasticity.

Authors:  Meera V Sundaram; Matthew Buechner
Journal:  Genetics       Date:  2016-05       Impact factor: 4.562

7.  Patterns of nucleotide polymorphism distinguish temperate and tropical wild isolates of Caenorhabditis briggsae.

Authors:  Asher D Cutter; Marie-Anne Félix; Antoine Barrière; Deborah Charlesworth
Journal:  Genetics       Date:  2006-06-18       Impact factor: 4.562

8.  Evolution of dnmt-2 and mbd-2-like genes in the free-living nematodes Pristionchus pacificus, Caenorhabditis elegans and Caenorhabditis briggsae.

Authors:  Arturo Gutierrez; Ralf J Sommer
Journal:  Nucleic Acids Res       Date:  2004-12-02       Impact factor: 16.971

9.  Genetic analysis of dauer formation in Caenorhabditis briggsae.

Authors:  Takao Inoue; Michael Ailion; Shirley Poon; Hannah K Kim; James H Thomas; Paul W Sternberg
Journal:  Genetics       Date:  2007-07-29       Impact factor: 4.562

10.  Natural variation of outcrossing in the hermaphroditic nematode Pristionchus pacificus.

Authors:  Arielle Click; Chandni H Savaliya; Simone Kienle; Matthias Herrmann; Andre Pires-daSilva
Journal:  BMC Evol Biol       Date:  2009-04-20       Impact factor: 3.260

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