Literature DB >> 12218022

Activation of the glnA, glnK, and nac promoters as Escherichia coli undergoes the transition from nitrogen excess growth to nitrogen starvation.

Mariette R Atkinson1, Timothy A Blauwkamp, Vladamir Bondarenko, Vasily Studitsky, Alexander J Ninfa.   

Abstract

The nitrogen-regulated genes and operons of the Ntr regulon of Escherichia coli are activated by the enhancer-binding transcriptional activator NRI approximately P (NtrC approximately P). Here, we examined the activation of the glnA, glnK, and nac promoters as cells undergo the transition from growth on ammonia to nitrogen starvation and examined the amplification of NRI during this transition. The results indicate that the concentration of NRI is increased as cells become starved for ammonia, concurrent with the activation of Ntr genes that have less- efficient enhancers than does glnA. A diauxic growth pattern was obtained when E. coli was grown on a low concentration of ammonia in combination with arginine as a nitrogen source, consistent with the hypothesis that Ntr genes other than glnA become activated only upon amplification of the NRI concentration.

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Year:  2002        PMID: 12218022      PMCID: PMC135341          DOI: 10.1128/JB.184.19.5358-5363.2002

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  22 in total

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Authors:  S Kustu; E Santero; J Keener; D Popham; D Weiss
Journal:  Microbiol Rev       Date:  1989-09

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Journal:  Anal Biochem       Date:  1986-02-01       Impact factor: 3.365

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Journal:  Gene       Date:  1987       Impact factor: 3.688

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Authors:  K Backman; Y M Chen; B Magasanik
Journal:  Proc Natl Acad Sci U S A       Date:  1981-06       Impact factor: 11.205

5.  Initiation of transcription at the bacterial glnAp2 promoter by purified E. coli components is facilitated by enhancers.

Authors:  A J Ninfa; L J Reitzer; B Magasanik
Journal:  Cell       Date:  1987-09-25       Impact factor: 41.582

6.  Glutamine synthetase from Escherichia coli.

Authors:  S G Rhee; P B Chock; E R Stadtman
Journal:  Methods Enzymol       Date:  1985       Impact factor: 1.600

7.  Nitrogen regulatory protein C-controlled genes of Escherichia coli: scavenging as a defense against nitrogen limitation.

Authors:  D P Zimmer; E Soupene; H L Lee; V F Wendisch; A B Khodursky; B J Peter; R A Bender; S Kustu
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-19       Impact factor: 11.205

8.  Role of the GlnK signal transduction protein in the regulation of nitrogen assimilation in Escherichia coli.

Authors:  M R Atkinson; A J Ninfa
Journal:  Mol Microbiol       Date:  1998-07       Impact factor: 3.501

9.  In vitro transcription of the nitrogen fixation regulatory operon nifLA of Klebsiella pneumoniae.

Authors:  P K Wong; D Popham; J Keener; S Kustu
Journal:  J Bacteriol       Date:  1987-06       Impact factor: 3.490

10.  A method for constructing single-copy lac fusions in Salmonella typhimurium and its application to the hemA-prfA operon.

Authors:  T Elliott
Journal:  J Bacteriol       Date:  1992-01       Impact factor: 3.490

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  31 in total

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Authors:  Augen A Pioszak; Alexander J Ninfa
Journal:  J Bacteriol       Date:  2003-02       Impact factor: 3.490

2.  Context-dependent functions of the PII and GlnK signal transduction proteins in Escherichia coli.

Authors:  Mariette R Atkinson; Timothy A Blauwkamp; Alexander J Ninfa
Journal:  J Bacteriol       Date:  2002-10       Impact factor: 3.490

3.  Mutations altering the N-terminal receiver domain of NRI (NtrC) That prevent dephosphorylation by the NRII-PII complex in Escherichia coli.

Authors:  Augen A Pioszak; Alexander J Ninfa
Journal:  J Bacteriol       Date:  2004-09       Impact factor: 3.490

4.  CADLIVE dynamic simulator: direct link of biochemical networks to dynamic models.

Authors:  Hiroyuki Kurata; Kouichi Masaki; Yoshiyuki Sumida; Rei Iwasaki
Journal:  Genome Res       Date:  2005-04       Impact factor: 9.043

5.  Transposon mutations in the 5' end of glnD, the gene for a nitrogen regulatory sensor, that suppress the osmosensitive phenotype caused by otsBA lesions in Escherichia coli.

Authors:  Anne Tøndervik; Haakon R Torgersen; Hans K Botnmark; Arne R Strøm
Journal:  J Bacteriol       Date:  2006-06       Impact factor: 3.490

6.  Building biological memory by linking positive feedback loops.

Authors:  Dong-Eun Chang; Shelly Leung; Mariette R Atkinson; Aaron Reifler; Daniel Forger; Alexander J Ninfa
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-14       Impact factor: 11.205

7.  Multi-scale genetic dynamic modelling II: application to synthetic biology: an algorithmic Markov chain based approach.

Authors:  Markus Kirkilionis; Ulrich Janus; Luca Sbano
Journal:  Theory Biosci       Date:  2011-04-21       Impact factor: 1.919

8.  Unnecessary signaling: poorly named?

Authors:  Alexander J Ninfa
Journal:  J Bacteriol       Date:  2011-07-08       Impact factor: 3.490

9.  Novel trans-Acting Bacillus subtilis glnA mutations that derepress glnRA expression.

Authors:  Susan H Fisher; Lewis V Wray
Journal:  J Bacteriol       Date:  2009-02-20       Impact factor: 3.490

10.  Identification and analysis of Escherichia coli proteins that interact with the histidine kinase NtrB in a yeast two-hybrid system.

Authors:  P Salinas; A Contreras
Journal:  Mol Genet Genomics       Date:  2003-06-28       Impact factor: 3.291

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