Literature DB >> 12217923

OrthoGUI: graphical presentation of Orthostrapper results.

Volker Hollich1, Christian E V Storm, Erik L L Sonnhammer.   

Abstract

SUMMARY: Orthostrapper is a program that calculates orthology support values for pairs of sequences in a multiple alignment (Storm and Sonnhammer, Bioinformatics, 18, 92-99, 2002). Here we present OrthoGUI, a web interface and display tool for Orthostrapper analysis. OrthoGUI visualizes the Orthostrapper output in both tabular and tree representations, and can also apply a clustering algorithm to identify groups of multiple orthologs, which are indicated by colour coding. AVAILABILITY: http://www.cgb.ki.se/OrthoGUI CONTACT: erik.sonnhammer@cgb.ki.se

Mesh:

Substances:

Year:  2002        PMID: 12217923     DOI: 10.1093/bioinformatics/18.9.1272

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  6 in total

1.  Comprehensive analysis of orthologous protein domains using the HOPS database.

Authors:  Christian E V Storm; Erik L L Sonnhammer
Journal:  Genome Res       Date:  2003-10       Impact factor: 9.043

2.  Computational methods for Gene Orthology inference.

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Journal:  Brief Bioinform       Date:  2011-06-19       Impact factor: 11.622

Review 3.  Determining microbial products and identifying molecular targets in the human microbiome.

Authors:  Regina Joice; Koji Yasuda; Afrah Shafquat; Xochitl C Morgan; Curtis Huttenhower
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4.  QuartetS: a fast and accurate algorithm for large-scale orthology detection.

Authors:  Chenggang Yu; Nela Zavaljevski; Valmik Desai; Jaques Reifman
Journal:  Nucleic Acids Res       Date:  2011-05-13       Impact factor: 16.971

Review 5.  Ortholog identification in the presence of domain architecture rearrangement.

Authors:  Kimmen Sjölander; Ruchira S Datta; Yaoqing Shen; Grant M Shoffner
Journal:  Brief Bioinform       Date:  2011-06-28       Impact factor: 11.622

6.  Scoredist: a simple and robust protein sequence distance estimator.

Authors:  Erik L L Sonnhammer; Volker Hollich
Journal:  BMC Bioinformatics       Date:  2005-04-27       Impact factor: 3.169

  6 in total

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