Literature DB >> 12211021

Folding and stretching in a Go-like model of titin.

Marek Cieplak1, Trinh Xuan Hoang, Mark O Robbins.   

Abstract

Mechanical stretching of the I27 domain of titin and of its double and triple repeats are studied through molecular dynamics simulations of a Go-like model with Lennard-Jones contact interactions. We provide a thorough characterization of the system and correlate the sequencing of the folding and unraveling events with each other and with the contact order. The roles of cantilever stiffness and pulling rate are studied. Unraveling of tandem titin structures has a serial nature. The force-displacement curves in this coarse-grained model are similar to those obtained through all atom calculations. Copyright 2002 Wiley-Liss, Inc.

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Year:  2002        PMID: 12211021     DOI: 10.1002/prot.10087

Source DB:  PubMed          Journal:  Proteins        ISSN: 0887-3585


  13 in total

1.  Universality classes in folding times of proteins.

Authors:  Marek Cieplak; Trinh Xuan Hoang
Journal:  Biophys J       Date:  2003-01       Impact factor: 4.033

2.  Computational investigation of the effect of thermal perturbation on the mechanical unfolding of titin I27.

Authors:  Navneet Bung; U Deva Priyakumar
Journal:  J Mol Model       Date:  2011-11-27       Impact factor: 1.810

3.  Inferring the diameter of a biopolymer from its stretching response.

Authors:  Ngo Minh Toan; Davide Marenduzzo; Cristian Micheletti
Journal:  Biophys J       Date:  2005-04-22       Impact factor: 4.033

4.  Coarse-grained peptide modeling using a systematic multiscale approach.

Authors:  Jian Zhou; Ian F Thorpe; Sergey Izvekov; Gregory A Voth
Journal:  Biophys J       Date:  2007-03-30       Impact factor: 4.033

5.  Predicting the order in which contacts are broken during single molecule protein stretching experiments.

Authors:  Joanna I Sułkowska; Andrzej Kloczkowski; Taner Z Sen; Marek Cieplak; Robert L Jernigan
Journal:  Proteins       Date:  2008-04

6.  Toward a molecular understanding of the anisotropic response of proteins to external forces: insights from elastic network models.

Authors:  Eran Eyal; Ivet Bahar
Journal:  Biophys J       Date:  2008-01-25       Impact factor: 4.033

7.  Connecting thermal and mechanical protein (un)folding landscapes.

Authors:  Li Sun; Jeffrey K Noel; Joanna I Sulkowska; Herbert Levine; José N Onuchic
Journal:  Biophys J       Date:  2014-12-16       Impact factor: 4.033

8.  Combined effect of confinement and affinity of crowded environment on conformation switching of adenylate kinase.

Authors:  Min Li; Weixin Xu; John Z H Zhang; Fei Xia
Journal:  J Mol Model       Date:  2014-11-29       Impact factor: 1.810

Review 9.  Experimental and computational characterization of biological liquid crystals: a review of single-molecule bioassays.

Authors:  Kilho Eom; Jaemoon Yang; Jinsung Park; Gwonchan Yoon; Young Soo Sohn; Shinsuk Park; Dae Sung Yoon; Sungsoo Na; Taeyun Kwon
Journal:  Int J Mol Sci       Date:  2009-09-10       Impact factor: 6.208

Review 10.  Insights from coarse-grained Gō models for protein folding and dynamics.

Authors:  Ronald D Hills; Charles L Brooks
Journal:  Int J Mol Sci       Date:  2009-03-02       Impact factor: 6.208

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