Literature DB >> 12206767

NMR investigation of the dynamics of tryptophan side-chains in hemoglobins.

Yue Yuan1, Virgil Simplaceanu, Jonathan A Lukin, Chien Ho.   

Abstract

NMR relaxation measurements of 15N spin-lattice relaxation rate (R(1)), spin-spin relaxation rate (R(2)), and heteronuclear nuclear Overhauser effect (NOE) have been carried out at 11.7T and 14.1T as a function of temperature for the side-chains of the tryptophan residues of 15N-labeled and/or (2H,15N)-labeled recombinant human normal adult hemoglobin (Hb A) and three recombinant mutant hemoglobins, rHb Kempsey (betaD99N), rHb (alphaY42D/betaD99N), and rHb (alphaV96W), in the carbonmonoxy and the deoxy forms as well as in the presence and in the absence of an allosteric effector, inositol hexaphosphate (IHP). There are three Trp residues (alpha14, beta15, and beta37) in Hb A for each alphabeta dimer. These Trp residues are located in important regions of the Hb molecule, i.e. alpha14Trp and beta15Trp are located in the alpha(1)beta(1) subunit interface and beta37Trp is located in the alpha(1)beta(2) subunit interface. The relaxation experiments show that amino acid substitutions in the alpha(1)beta(2) subunit interface can alter the dynamics of beta37Trp. The transverse relaxation rate (R(2)) for beta37Trp can serve as a marker for the dynamics of the alpha(1)beta(2) subunit interface. The relaxation parameters of deoxy-rHb Kemspey (betaD99N), which is a naturally occurring abnormal human hemoglobin with high oxygen affinity and very low cooperativity, are quite different from those of deoxy-Hb A, even in the presence of IHP. The relaxation parameters for rHb (alphaY42D/betaD99N), which is a compensatory mutant of rHb Kempsey, are more similar to those of Hb A. In addition, TROSY-CPMG experiments have been used to investigate conformational exchange in the Trp residues of Hb A and the three mutant rHbs. Experimental results indicate that the side-chain of beta37Trp is involved in a relatively slow conformational exchange on the micro- to millisecond time-scale under certain experimental conditions. The present results provide new dynamic insights into the structure-function relationship in hemoglobin.

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Year:  2002        PMID: 12206767     DOI: 10.1016/s0022-2836(02)00704-0

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  13 in total

1.  An investigation of the distal histidyl hydrogen bonds in oxyhemoglobin: effects of temperature, pH, and inositol hexaphosphate.

Authors:  Yue Yuan; Virgil Simplaceanu; Nancy T Ho; Chien Ho
Journal:  Biochemistry       Date:  2010-11-29       Impact factor: 3.162

2.  Solution structure and backbone dynamics of the DNA-binding domain of FOXP1: insight into its domain swapping and DNA binding.

Authors:  Yuan-Ping Chu; Chia-Hao Chang; Jia-Hau Shiu; Yao-Tsung Chang; Chiu-Yueh Chen; Woei-Jer Chuang
Journal:  Protein Sci       Date:  2011-04-11       Impact factor: 6.725

3.  Gramicidin A backbone and side chain dynamics evaluated by molecular dynamics simulations and nuclear magnetic resonance experiments. II: nuclear magnetic resonance experiments.

Authors:  Vitaly V Vostrikov; Hong Gu; Helgi I Ingólfsson; James F Hinton; Olaf S Andersen; Benoît Roux; Roger E Koeppe
Journal:  J Phys Chem B       Date:  2011-05-16       Impact factor: 2.991

4.  Solution structure and dynamics of human hemoglobin in the carbonmonoxy form.

Authors:  Jing-Song Fan; Yu Zheng; Wing-Yiu Choy; Virgil Simplaceanu; Nancy T Ho; Chien Ho; Daiwen Yang
Journal:  Biochemistry       Date:  2013-08-15       Impact factor: 3.162

5.  Backbone dynamics of deoxy and carbonmonoxy hemoglobin by NMR/SRLS.

Authors:  Eva Meirovitch; Mirco Zerbetto; Antonino Polimeno; Jack H Freed
Journal:  J Phys Chem B       Date:  2010-12-16       Impact factor: 2.991

6.  WAXS studies of the structural diversity of hemoglobin in solution.

Authors:  L Makowski; J Bardhan; D Gore; J Lal; S Mandava; S Park; D J Rodi; N T Ho; C Ho; R F Fischetti
Journal:  J Mol Biol       Date:  2011-03-21       Impact factor: 5.469

Review 7.  New look at hemoglobin allostery.

Authors:  Yue Yuan; Ming F Tam; Virgil Simplaceanu; Chien Ho
Journal:  Chem Rev       Date:  2015-01-21       Impact factor: 60.622

8.  A comparative NMR study of the polypeptide backbone dynamics of hemoglobin in the deoxy and carbonmonoxy forms.

Authors:  Xiang-Jin Song; Yue Yuan; Virgil Simplaceanu; Sarata Chandra Sahu; Nancy T Ho; Chien Ho
Journal:  Biochemistry       Date:  2007-05-12       Impact factor: 3.162

9.  High frequency dynamics in hemoglobin measured by magnetic relaxation dispersion.

Authors:  Ken Victor; Alexandra Van-Quynh; Robert G Bryant
Journal:  Biophys J       Date:  2004-10-08       Impact factor: 4.033

10.  Effector-induced structural fluctuation regulates the ligand affinity of an allosteric protein: binding of inositol hexaphosphate has distinct dynamic consequences for the T and R states of hemoglobin.

Authors:  Xiang-jin Song; Virgil Simplaceanu; Nancy T Ho; Chien Ho
Journal:  Biochemistry       Date:  2008-04-01       Impact factor: 3.162

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