Literature DB >> 12206459

Structure and function of phi29 hexameric RNA that drives the viral DNA packaging motor: review.

Peixuan Guo1.   

Abstract

One notable feature of linear dsDNA viruses is that, during replication, their lengthy genome is squeezed with remarkable velocity into a preformed procapsid and packed into near crystalline density. A molecular motor using ATP as energy accomplishes this energetically unfavorable motion tack. In bacterial virus phi29, an RNA (pRNA) molecule is a vital component of this motor. This 120-base RNA has many novel and distinctive features. It contains strong secondary structure, is tightly folded, and unusually stable. Upon interaction with ion and proteins, it has a knack to adapt numerous conformations to perform versatile function. It can be easily manipulated to form stable homologous monomers, dimers, trimers and hexamers. As a result, many unknown properties of RNA have been and will be unfolded by the study of this extraordinary molecule. This article reviews the structure and function of this pRNA and focuses on novel methods and unique approaches that lead to the illumination of its structure and function.

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Year:  2002        PMID: 12206459     DOI: 10.1016/s0079-6603(02)72076-x

Source DB:  PubMed          Journal:  Prog Nucleic Acid Res Mol Biol        ISSN: 0079-6603


  25 in total

1.  Bottom-up Assembly of RNA Arrays and Superstructures as Potential Parts in Nanotechnology.

Authors:  Dan Shu; Wulf-Dieter Moll; Zhaoxiang Deng; Chengde Mao; Peixuan Guo
Journal:  Nano Lett       Date:  2004-09       Impact factor: 11.189

2.  Formation of lipid bilayers inside microfluidic channel array for monitoring membrane-embedded nanopores of phi29 DNA packaging nanomotor.

Authors:  Joon S Shim; Jia Geng; Chong H Ahn; Peixuan Guo
Journal:  Biomed Microdevices       Date:  2012-10       Impact factor: 2.838

Review 3.  RNA nanotechnology: engineering, assembly and applications in detection, gene delivery and therapy.

Authors:  Peixuan Guo
Journal:  J Nanosci Nanotechnol       Date:  2005-12

4.  Evolutionary patterns of non-coding RNAs.

Authors:  Athanasius F Bompfünewerer; Christoph Flamm; Claudia Fried; Guido Fritzsch; Ivo L Hofacker; Jörg Lehmann; Kristin Missal; Axel Mosig; Bettina Müller; Sonja J Prohaska; Bärbel M R Stadler; Peter F Stadler; Andrea Tanzer; Stefan Washietl; Christina Witwer
Journal:  Theory Biosci       Date:  2005-04       Impact factor: 1.919

5.  Modular assembly of chimeric phi29 packaging RNAs that support DNA packaging.

Authors:  Yun Fang; Dan Shu; Feng Xiao; Peixuan Guo; Peter Z Qin
Journal:  Biochem Biophys Res Commun       Date:  2008-06-02       Impact factor: 3.575

6.  Structure and assembly of the essential RNA ring component of a viral DNA packaging motor.

Authors:  Fang Ding; Changrui Lu; Wei Zhao; Kanagalaghatta R Rajashankar; Dwight L Anderson; Paul J Jardine; Shelley Grimes; Ailong Ke
Journal:  Proc Natl Acad Sci U S A       Date:  2011-04-06       Impact factor: 11.205

7.  Complete genome of the broad-host-range Erwinia amylovora phage phiEa21-4 and its relationship to Salmonella phage felix O1.

Authors:  Susan M Lehman; Andrew M Kropinski; Alan J Castle; Antonet M Svircev
Journal:  Appl Environ Microbiol       Date:  2009-01-30       Impact factor: 4.792

8.  Assembly mechanism of the sixty-subunit nanoparticles via interaction of RNA with the reengineered protein connector of phi29 DNA-packaging motor.

Authors:  Feng Xiao; Borries Demeler; Peixuan Guo
Journal:  ACS Nano       Date:  2010-06-22       Impact factor: 15.881

Review 9.  Engineering RNA for targeted siRNA delivery and medical application.

Authors:  Peixuan Guo; Oana Coban; Nicholas M Snead; Joe Trebley; Steve Hoeprich; Songchuan Guo; Yi Shu
Journal:  Adv Drug Deliv Rev       Date:  2010-03-15       Impact factor: 15.470

10.  Dual-channel single-molecule fluorescence resonance energy transfer to establish distance parameters for RNA nanoparticles.

Authors:  Dan Shu; Hui Zhang; Roman Petrenko; Jarek Meller; Peixuan Guo
Journal:  ACS Nano       Date:  2010-10-18       Impact factor: 15.881

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