Literature DB >> 12206310

Complete nucleotide sequence, genome organization and phylogenic analysis of the canine calicivirus.

Yuichi Matsuura1, Yukinobu Tohya, Kazuya Nakamura, Masayuki Shimojima, Frank Roerink, Masami Mochizuki, Kozo Takase, Hiroomi Akashi, Takaaki Sugimura.   

Abstract

The complete genomic sequence of canine calicivirus (CaCV) isolated from feces of a dog with diarrhea was determined. The CaCV genome, a positive-sense single-stranded RNA, contained 8513 nucleotides excluding the poly(A) tail and was longer than that of any other calicivirus strain with a completely known sequence. There were three open reading frames (ORF1, nt 12-5801; ORF2, nt 5805-7880; and ORF3, nt 7877-8278). ORF1 encoded a polyprotein (calculated Mr of 214,802) which had the conserved motifs of non-structural proteins of other caliciviruses and picornaviruses. Regions containing characteristic motifs in the non-structural polyprotein of CaCV showed highest similarity with those of the species Feline calicivirus and Vesicular exanthema of swine virus in the genus Vesivirus. Phylogenic analysis indicated that CaCV formed a distinct branch within the genus. Our results strongly suggested that CaCV is a new species in the genus Vesivirus.

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Year:  2002        PMID： 12206310     DOI： 10.1023/a:1020174225622

Source DB:  PubMed          Journal:  Virus Genes        ISSN： 0920-8569            Impact factor:   2.332


  32 in total

1.  Organization of the canine calicivirus genome from the RNA polymerase gene to the poly(A) tail.

Authors:  F Roerink; M Hashimoto; Y Tohya; M Mochizuki
Journal:  J Gen Virol       Date:  1999-04       Impact factor: 3.891

2.  Completion of the Norwalk virus genome sequence.

Authors:  M E Hardy; M K Estes
Journal:  Virus Genes       Date:  1996       Impact factor: 2.332

3.  Sequence and genomic organization of Norwalk virus.

Authors:  X Jiang; M Wang; K Wang; M K Estes
Journal:  Virology       Date:  1993-07       Impact factor: 3.616

4.  Characterization of a new calicivirus isolated from feces of a dog.

Authors:  F L Schaffer; M E Soergel; J W Black; D E Skilling; A W Smith; W D Cubitt
Journal:  Arch Virol       Date:  1985       Impact factor: 2.574

5.  The molecular cloning and sequence of an open reading frame encoding for non-structural proteins of feline calicivirus F4 strain isolated in Japan.

Authors:  R Oshikamo; Y Tohya; Y Kawaguchi; K Tomonaga; K Maeda; N Takeda; E Utagawa; C Kai; T Mikami
Journal:  J Vet Med Sci       Date:  1994-12       Impact factor: 1.267

6.  RNA transcripts derived from a cloned full-length copy of the feline calicivirus genome do not require VpG for infectivity.

Authors:  S Sosnovtsev; K Y Green
Journal:  Virology       Date:  1995-07-10       Impact factor: 3.616

7.  Human enteric caliciviruses have a unique genome structure and are distinct from the Norwalk-like viruses.

Authors:  B L Liu; I N Clarke; E O Caul; P R Lambden
Journal:  Arch Virol       Date:  1995       Impact factor: 2.574

8.  Feline calicivirus protein synthesis investigated by western blotting.

Authors:  M J Carter
Journal:  Arch Virol       Date:  1989       Impact factor: 2.574

9.  Genomic and subgenomic RNAs of rabbit hemorrhagic disease virus are both protein-linked and packaged into particles.

Authors:  G Meyers; C Wirblich; H J Thiel
Journal:  Virology       Date:  1991-10       Impact factor: 3.616

10.  Further characterization of the virus-specific RNAs in feline calicivirus infected cells.

Authors:  J D Neill; W L Mengeling
Journal:  Virus Res       Date:  1988-08       Impact factor: 3.303
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  13 in total

1.  Outbreak of canine norovirus infection in young dogs.

Authors:  Vasileios Ntafis; Eftychia Xylouri; Arianna Radogna; Canio Buonavoglia; Vito Martella
Journal:  J Clin Microbiol       Date:  2010-05-19       Impact factor: 5.948

2.  Genetic heterogeneity of porcine enteric caliciviruses identified from diarrhoeic piglets.

Authors:  V Martella; K Bányai; E Lorusso; A L Bellacicco; N Decaro; V Mari; L Saif; V Costantini; S De Grazia; G Pezzotti; A Lavazza; C Buonavoglia
Journal:  Virus Genes       Date:  2008-01-19       Impact factor: 2.332

3.  High genetic diversity of the immunodominant region of the feline calicivirus capsid gene in endemically infected cat colonies.

Authors:  Alan D Radford; Susan Dawson; Ruth Ryvar; Karen Coyne; Deborah R Johnson; Michael B Cox; Els F J Acke; Diane D Addie; Rosalind M Gaskell
Journal:  Virus Genes       Date:  2003-10       Impact factor: 2.332

4.  Calicivirus inactivation by nonionizing (253.7-nanometer-wavelength [UV]) and ionizing (gamma) radiation.

Authors:  Ana Maria De Roda Husman; Paul Bijkerk; Willemijn Lodder; Harold Van Den Berg; Walter Pribil; Alexander Cabaj; Peter Gehringer; Regina Sommer; Erwin Duizer
Journal:  Appl Environ Microbiol       Date:  2004-09       Impact factor: 4.792

5.  Molecular and seroepidemiological evidence of canine calicivirus infections in Japan.

Authors:  Masami Mochizuki; Michiru Hashimoto; Frank Roerink; Yukinobu Tohya; Yuichi Matsuura; Nobuo Sasaki
Journal:  J Clin Microbiol       Date:  2002-07       Impact factor: 5.948

6.  Circovirus in tissues of dogs with vasculitis and hemorrhage.

Authors:  Linlin Li; Sabrina McGraw; Kevin Zhu; Christian M Leutenegger; Stanley L Marks; Steven Kubiski; Patricia Gaffney; Florante N Dela Cruz; Chunlin Wang; Eric Delwart; Patricia A Pesavento
Journal:  Emerg Infect Dis       Date:  2013-04       Impact factor: 6.883

7.  Molecular characterization of canine astrovirus, vesivirus and circovirus, isolated from diarrheic dogs in Turkey.

Authors:  T Turan; H Işıdan
Journal:  Iran J Vet Res       Date:  2020       Impact factor: 1.376

8.  Genetic characterization of a reptilian calicivirus (Cro1).

Authors:  Carlos Sandoval-Jaime; Gabriel I Parra; Alvin W Smith; Kim Y Green; Stanislav V Sosnovtsev
Journal:  Virol J       Date:  2012-11-29       Impact factor: 4.099

9.  Detection and molecular characterization of a canine norovirus.

Authors:  Vito Martella; Eleonora Lorusso; Niccola Decaro; Gabriella Elia; Arianna Radogna; Maria D'Abramo; Costantina Desario; Alessandra Cavalli; Marialaura Corrente; Michelle Camero; Cinzia A Germinario; Krisztian Bányai; Barbara Di Martino; Fulvio Marsilio; Leland E Carmichael; Canio Buonavoglia
Journal:  Emerg Infect Dis       Date:  2008-08       Impact factor: 6.883

10.  Canine caliciviruses of four serotypes from military and research dogs recovered in 1963-1978 belong to two phylogenetic clades in the Vesivirus genus.

Authors:  Leonard N Binn; Erica A Norby; Ruth H Marchwicki; Richard G Jarman; Paul B Keiser; Jun Hang
Journal:  Virol J       Date:  2018-02-23       Impact factor: 4.099
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