Literature DB >> 12202757

Polyamine structural effects on the induction and stabilization of liquid crystalline DNA: potential applications to DNA packaging, gene therapy and polyamine therapeutics.

M Saminathan1, Thresia Thomas, Akira Shirahata, C K S Pillai, T J Thomas.   

Abstract

DNA undergoes condensation, conformational transitions, aggregation and resolubilization in the presence of polyamines, positively charged organic molecules present in all cells. Under carefully controlled environmental conditions, DNA can also transform to a liquid crystalline state in vitro. We undertook the present work to examine the ability of spermidine, N4-methylspermidine, spermine, N1-acetylspermine and a group of tetramine, pentamine and hexamine analogs of spermine to induce and stabilize liquid crystalline DNA. Liquid crystalline textures were identified under a polarizing microscope. In the absence of polyamines, calf thymus DNA assumed a diffused, planar cholesteric phase with entrapped bubbles when incubated on a glass slide at 37 degrees C. In the presence of spermidine and spermine, the characteristic fingerprint textures of the cholesteric phase, adopting a hexagonal order, were obtained. The helical pitch was 2.5 micro m. The final structures were dendrimeric and crystalline when DNA was treated with spermine homologs and bis(ethyl) derivatives. A cholesteric structure was observed when DNA was treated with a hexamine at 37 degrees C. This structure changed to a hexagonal dendrimer with fluidity on prolonged incubation. These data show a structural specificity effect of polyamines on liquid crystalline phase transitions of DNA and suggest a possible physiological function of natural polyamines.

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Year:  2002        PMID: 12202757      PMCID: PMC137425          DOI: 10.1093/nar/gkf503

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  57 in total

1.  Cryoelectron microscopy of lambda phage DNA condensates in vitreous ice: the fine structure of DNA toroids.

Authors:  N V Hud; K H Downing
Journal:  Proc Natl Acad Sci U S A       Date:  2001-12-04       Impact factor: 11.205

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Journal:  Biopolymers       Date:  1990       Impact factor: 2.505

3.  Hexagonal crystal structure of the A-DNA octamer d(GTGTACAC) and its comparison with the tetragonal structure: correlated variations in helical parameters.

Authors:  S Jain; G Zon; M Sundaralingam
Journal:  Biochemistry       Date:  1991-04-09       Impact factor: 3.162

4.  Hexamminecobalt(III)-induced condensation of calf thymus DNA: circular dichroism and hydration measurements.

Authors:  B I Kankia; V Buckin; V A Bloomfield
Journal:  Nucleic Acids Res       Date:  2001-07-01       Impact factor: 16.971

5.  Precipitation of DNA by polyamines: a polyelectrolyte behavior.

Authors:  E Raspaud; M Olvera de la Cruz; J L Sikorav; F Livolant
Journal:  Biophys J       Date:  1998-01       Impact factor: 4.033

6.  Supramolecular ordering of DNA in the cholesteric liquid crystalline phase: an ultrastructural study.

Authors:  A Leforestier; F Livolant
Journal:  Biophys J       Date:  1993-07       Impact factor: 4.033

7.  Precollapse of T7 DNA by spermidine at low ionic strength: a linear dichroism and intrinsic viscosity study.

Authors:  W A Baase; P W Staskus; S A Allison
Journal:  Biopolymers       Date:  1984-12       Impact factor: 2.505

8.  DNA condensation by polyamines: a laser light scattering study of structural effects.

Authors:  V Vijayanathan; T Thomas; A Shirahata; T J Thomas
Journal:  Biochemistry       Date:  2001-11-13       Impact factor: 3.162

Review 9.  Sequestered end products and enzyme regulation: the case of ornithine decarboxylase.

Authors:  R H Davis; D R Morris; P Coffino
Journal:  Microbiol Rev       Date:  1992-06

10.  Targeted gene transfer into hepatoma cells with lipopolyamine-condensed DNA particles presenting galactose ligands: a stage toward artificial viruses.

Authors:  J S Remy; A Kichler; V Mordvinov; F Schuber; J P Behr
Journal:  Proc Natl Acad Sci U S A       Date:  1995-02-28       Impact factor: 11.205

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  15 in total

1.  On the interpretation of Raman spectra of 1-aminooxy-spermine/DNA complexes.

Authors:  A J Ruiz-Chica; M A Medina; F Sánchez-Jiménez; F J Ramírez
Journal:  Nucleic Acids Res       Date:  2004-01-29       Impact factor: 16.971

2.  Structural and dynamic properties of linker histone H1 binding to DNA.

Authors:  Rolf Dootz; Adriana C Toma; Thomas Pfohl
Journal:  Biomicrofluidics       Date:  2011-05-04       Impact factor: 2.800

3.  Mechanistic insight into the structure and dynamics of entangled and hydrated λ-phage DNA.

Authors:  Sandipan Chakraborty; Takashi Uematsu; Christer Svanberg; Per Jacobsson; Jan Swenson; Michael Zäch; Rajendar Trehan; George Armstrong; Bidisha Sengupta
Journal:  J Phys Chem A       Date:  2012-04-19       Impact factor: 2.781

4.  Mechanistic differences in DNA nanoparticle formation in the presence of oligolysines and poly-L-lysine.

Authors:  Irina Nayvelt; Thresia Thomas; T J Thomas
Journal:  Biomacromolecules       Date:  2007-02       Impact factor: 6.988

5.  Long Tracts of Guanines Drive Aggregation of RNA G-Quadruplexes in the Presence of Spermine.

Authors:  Allison M Williams; Raghav R Poudyal; Philip C Bevilacqua
Journal:  Biochemistry       Date:  2021-08-27       Impact factor: 3.321

6.  Enhanced cellular uptake of a triplex-forming oligonucleotide by nanoparticle formation in the presence of polypropylenimine dendrimers.

Authors:  Latha M Santhakumaran; Thresia Thomas; T J Thomas
Journal:  Nucleic Acids Res       Date:  2004-04-15       Impact factor: 16.971

7.  Formation of DNA nanoparticles in the presence of novel polyamine analogues: a laser light scattering and atomic force microscopic study.

Authors:  Veena Vijayanathan; Thresia Thomas; Thomas Antony; Akira Shirahata; T J Thomas
Journal:  Nucleic Acids Res       Date:  2004-01-02       Impact factor: 16.971

8.  Over-expression of the apple spermidine synthase gene in pear confers multiple abiotic stress tolerance by altering polyamine titers.

Authors:  Xiao-Peng Wen; Xiao-Ming Pang; Narumi Matsuda; Masayuki Kita; Hiromichi Inoue; Yu-Jin Hao; Chikako Honda; Takaya Moriguchi
Journal:  Transgenic Res       Date:  2007-06-05       Impact factor: 2.788

9.  Effects of Structural Isomers of Spermine on the Higher-Order Structure of DNA and Gene Expression.

Authors:  Tomoki Kitagawa; Takashi Nishio; Yuko Yoshikawa; Naoki Umezawa; Tsunehiko Higuchi; Chwen-Yang Shew; Takahiro Kenmotsu; Kenichi Yoshikawa
Journal:  Int J Mol Sci       Date:  2021-02-26       Impact factor: 5.923

10.  In vitro non-viral gene delivery with nanofibrous scaffolds.

Authors:  Dehai Liang; Yen K Luu; Kwangsok Kim; Benjamin S Hsiao; Michael Hadjiargyrou; Benjamin Chu
Journal:  Nucleic Acids Res       Date:  2005-11-03       Impact factor: 16.971

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