Literature DB >> 12200166

Decoding cis-regulatory DNAs in the Drosophila genome.

Michele Markstein1, Michael Levine.   

Abstract

Cis-regulatory DNAs control the timing and sites of gene expression during metazoan development. Changes in gene expression are responsible for the morphological diversification of metazoan body plans. However, traditional methods for the identification and characterization of cis-regulatory DNAs are tedious. During the past year, computational methods have been used to identify novel cis-DNAs within the entire Drosophila genome. These methods change the way that cis-DNAs will be analyzed in future studies and offer the promise of unraveling complex gene networks.

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Year:  2002        PMID: 12200166     DOI: 10.1016/s0959-437x(02)00345-3

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  23 in total

1.  Identification of sparsely distributed clusters of cis-regulatory elements in sets of co-expressed genes.

Authors:  Gabriel Kreiman
Journal:  Nucleic Acids Res       Date:  2004-05-20       Impact factor: 16.971

2.  An alignment-free method to identify candidate orthologous enhancers in multiple Drosophila genomes.

Authors:  Manonmani Arunachalam; Karthik Jayasurya; Pavel Tomancak; Uwe Ohler
Journal:  Bioinformatics       Date:  2010-07-11       Impact factor: 6.937

3.  Initial deployment of the cardiogenic gene regulatory network in the basal chordate, Ciona intestinalis.

Authors:  Arielle Woznica; Maximilian Haeussler; Ella Starobinska; Jessica Jemmett; Younan Li; David Mount; Brad Davidson
Journal:  Dev Biol       Date:  2012-05-14       Impact factor: 3.582

Review 4.  Discrimination in partnership: compartment-specific interactions of Hox proteins.

Authors:  K G Guruharsha; K Vijayraghavan
Journal:  J Genet       Date:  2004-12       Impact factor: 1.166

5.  cis-regulatory logic of short-range transcriptional repression in Drosophila melanogaster.

Authors:  Meghana M Kulkarni; David N Arnosti
Journal:  Mol Cell Biol       Date:  2005-05       Impact factor: 4.272

6.  Identification of genomic sites that bind the Drosophila suppressor of Hairy-wing insulator protein.

Authors:  Timothy J Parnell; Emily J Kuhn; Brian L Gilmore; Cecilia Helou; Marc S Wold; Pamela K Geyer
Journal:  Mol Cell Biol       Date:  2006-08       Impact factor: 4.272

7.  Chromatin insulators specifically associate with different levels of higher-order chromatin organization in Drosophila.

Authors:  Heather A Wallace; Maria P Plata; Hyuck-Joon Kang; Misty Ross; Mariano Labrador
Journal:  Chromosoma       Date:  2009-12-23       Impact factor: 4.316

8.  The RNA Pol II elongation factor Ell3 marks enhancers in ES cells and primes future gene activation.

Authors:  Chengqi Lin; Alexander S Garruss; Zhuojuan Luo; Fengli Guo; Ali Shilatifard
Journal:  Cell       Date:  2012-12-27       Impact factor: 41.582

9.  Genome-wide identification of direct targets of the Drosophila retinal determination protein Eyeless.

Authors:  Edwin J Ostrin; Yumei Li; Kristi Hoffman; Jing Liu; Keqing Wang; Li Zhang; Graeme Mardon; Rui Chen
Journal:  Genome Res       Date:  2006-03-13       Impact factor: 9.043

10.  Genome-wide mapping of boundary element-associated factor (BEAF) binding sites in Drosophila melanogaster links BEAF to transcription.

Authors:  Nan Jiang; Eldon Emberly; Olivier Cuvier; Craig M Hart
Journal:  Mol Cell Biol       Date:  2009-04-20       Impact factor: 4.272

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