Literature DB >> 12192591

The genomics of yeast responses to environmental stress and starvation.

Audrey P Gasch1, Margaret Werner-Washburne.   

Abstract

Unicellular organisms such as yeast have evolved to survive constant fluctuations in their external surroundings by rapidly adapting their internal systems to meet the challenges of each new environment. One aspect of this cellular adaptation is the reorganization of genomic expression to the program required for growth in each environment. The reprogramming of genomic expression can be unveiled using DNA microarrays, which measure the relative transcript abundance of essentially every gene in an organism's genome. Characterizing environmentally triggered gene expression changes provides insights into when, where, and how each gene is expressed and offers a glimpse at the physiological response of the cells to changes in their surroundings. This review will focus on the genomic expression responses of the budding yeast Saccharomyces cerevisiae to diverse environmental changes, highlighting some of the themes that have emerged from the collection of published yeast genomic expression studies. The results of these studies present insights as to how yeast cells sense and respond to each new environment, and suggest mechanisms that this organism uses to survive stressful environmental changes.

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Year:  2002        PMID: 12192591     DOI: 10.1007/s10142-002-0058-2

Source DB:  PubMed          Journal:  Funct Integr Genomics        ISSN: 1438-793X            Impact factor:   3.410


  156 in total

1.  The transcriptome of prematurely aging yeast cells is similar to that of telomerase-deficient cells.

Authors:  Isabelle Lesur; Judith L Campbell
Journal:  Mol Biol Cell       Date:  2004-01-12       Impact factor: 4.138

2.  Systems level insights into the stress response to UV radiation in the halophilic archaeon Halobacterium NRC-1.

Authors:  Nitin S Baliga; Sarah J Bjork; Richard Bonneau; Min Pan; Chika Iloanusi; Molly C H Kottemann; Leroy Hood; Jocelyne DiRuggiero
Journal:  Genome Res       Date:  2004-05-12       Impact factor: 9.043

3.  Hyperosmotic stress induces aquaporin-dependent cell shrinkage, polyphosphate synthesis, amino acid accumulation, and global gene expression changes in Trypanosoma cruzi.

Authors:  Zhu-Hong Li; Vanina E Alvarez; Javier G De Gaudenzi; Celso Sant'Anna; Alberto C C Frasch; Juan J Cazzulo; Roberto Docampo
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4.  Network enrichment analysis in complex experiments.

Authors:  Ali Shojaie; George Michailidis
Journal:  Stat Appl Genet Mol Biol       Date:  2010-05-22

5.  The RNA polymerase II subunit Rpb4p mediates decay of a specific class of mRNAs.

Authors:  Rona Lotan; Vicky Goler Bar-On; Liat Harel-Sharvit; Lea Duek; Daniel Melamed; Mordechai Choder
Journal:  Genes Dev       Date:  2005-12-15       Impact factor: 11.361

6.  Cotranscriptional recruitment to the mRNA export receptor Mex67p contributes to nuclear pore anchoring of activated genes.

Authors:  Guennaelle Dieppois; Nahid Iglesias; Françoise Stutz
Journal:  Mol Cell Biol       Date:  2006-09-05       Impact factor: 4.272

7.  Physiological and transcriptional responses of anaerobic chemostat cultures of Saccharomyces cerevisiae subjected to diurnal temperature cycles.

Authors:  Marit Hebly; Dick de Ridder; Erik A F de Hulster; Pilar de la Torre Cortes; Jack T Pronk; Pascale Daran-Lapujade
Journal:  Appl Environ Microbiol       Date:  2014-05-09       Impact factor: 4.792

8.  Salt-dependent expression of ammonium assimilation genes in the halotolerant yeast, Debaryomyces hansenii.

Authors:  Carlos A Guerrero; Cristina Aranda; Alexander Deluna; Patrizia Filetici; Lina Riego; Víctor Hugo Anaya; Alicia González
Journal:  Curr Genet       Date:  2005-01-27       Impact factor: 3.886

9.  Hsp90 Maintains Proteostasis of the Galactose Utilization Pathway To Prevent Cell Lethality.

Authors:  Rajaneesh Karimpurath Gopinath; Jun-Yi Leu
Journal:  Mol Cell Biol       Date:  2016-04-15       Impact factor: 4.272

10.  Chitin synthesis in Saccharomyces cerevisiae in response to supplementation of growth medium with glucosamine and cell wall stress.

Authors:  Dorota A Bulik; Mariusz Olczak; Hector A Lucero; Barbara C Osmond; Phillips W Robbins; Charles A Specht
Journal:  Eukaryot Cell       Date:  2003-10
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