Literature DB >> 12180992

Electrostatic role of aromatic ring stacking in the pH-sensitive modulation of a chymotrypsin-type serine protease, Achromobacter protease I.

Kentaro Shiraki1, Shigemi Norioka, Shaoliang Li, Kiyonobu Yokota, Fumio Sakiyama.   

Abstract

Achromobacter protease I (API) has a unique region of aromatic ring stacking with Trp169-His210 in close proximity to the catalytic triad. This paper reveals the electrostatic role of aromatic stacking in the shift in optimum pH to the alkaline region, which is the highest pH range (8.5-10) among chymotrypsin-type serine proteases. The pH-activity profile of API showed a sigmoidal distribution that appears at pH 8-10, with a shoulder at pH 6-8. Variants with smaller amino acid residues substituted for Trp169 had lower pH optima on the acidic side by 0-0.9 units. On the other hand, replacement of His210 by Ala or Ser lowered the acidic rim by 1.9 pH units, which is essentially identical to that of chymotrypsin and trypsin. Energy minimization for the mutant structures suggested that the side-chain of Trp169 stacked with His210 was responsible for isolation of the electrostatic interaction between His210 and the catalytic Asp113 from solvent. The aromatic stacking regulates the low activity at neutral pH and the high activity at alkaline pH due to the interference of the hydrogen bonded network in the catalytic triad residues.

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Year:  2002        PMID: 12180992     DOI: 10.1046/j.1432-1033.2002.03110.x

Source DB:  PubMed          Journal:  Eur J Biochem        ISSN: 0014-2956


  7 in total

1.  Crystallization and preliminary crystallographic analysis of Achromobacter protease I mutants.

Authors:  Len Ito; Kentaro Shiraki; Tatsuya Uchida; Masaki Okumura; Hiroshi Yamaguchi
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-10-29

2.  pH dependency of the carboxyl oxygen exchange reaction catalyzed by lysyl endopeptidase and trypsin.

Authors:  Dagmar Hajkova; K C Sekhar Rao; Masaru Miyagi
Journal:  J Proteome Res       Date:  2006-07       Impact factor: 4.466

3.  Structure of the bacterial teichoic acid polymerase TagF provides insights into membrane association and catalysis.

Authors:  Andrew L Lovering; Leo Y-C Lin; Edward W Sewell; Thomas Spreter; Eric D Brown; Natalie C J Strynadka
Journal:  Nat Struct Mol Biol       Date:  2010-04-18       Impact factor: 15.369

4.  Self-assembly of l-phenylalanine amino acid: electrostatic induced hindrance of fibril formation.

Authors:  Deepak Tomar; Shilpi Chaudhary; Kailash Chandra Jena
Journal:  RSC Adv       Date:  2019-04-23       Impact factor: 4.036

5.  Anomalous pH-dependence of the activity of human matrilysin (matrix metalloproteinase-7) as revealed by nitration and amination of its tyrosine residues.

Authors:  Yuko Muta; Hiroshi Oneda; Kuniyo Inouye
Journal:  Biochem J       Date:  2005-03-01       Impact factor: 3.857

6.  A second lysine-specific serine protease from Lysobacter sp. strain IB-9374.

Authors:  Shigeru Chohnan; Kentaro Shiraki; Kiyonobu Yokota; Makoto Ohshima; Natsuki Kuroiwa; Kashfia Ahmed; Takeharu Masaki; Fumio Sakiyama
Journal:  J Bacteriol       Date:  2004-08       Impact factor: 3.490

7.  Structural Insight into and Mutational Analysis of Family 11 Xylanases: Implications for Mechanisms of Higher pH Catalytic Adaptation.

Authors:  Wenqin Bai; Cheng Zhou; Yueju Zhao; Qinhong Wang; Yanhe Ma
Journal:  PLoS One       Date:  2015-07-10       Impact factor: 3.240

  7 in total

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