Literature DB >> 12180093

Challenges in applying microarrays to environmental studies.

Jizhong Zhou1, Dorothea K Thompson.   

Abstract

Although DNA microarray technology has been used successfully to analyze global gene expression in pure cultures, it has not been rigorously tested and evaluated within the context of complex environmental samples. Adapting microarray hybridization for use in environmental studies faces several challenges associated with specificity, sensitivity and quantitation.

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Year:  2002        PMID： 12180093     DOI： 10.1016/s0958-1669(02)00319-1

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN： 0958-1669            Impact factor:   9.740


  30 in total

Review 1.  Metagenomic analyses: past and future trends.

Authors:  Carola Simon; Rolf Daniel
Journal:  Appl Environ Microbiol       Date:  2010-12-17       Impact factor: 4.792

2.  Use of microarrays with different probe sizes for monitoring gene expression.

Authors:  Zhili He; Liyou Wu; Matthew W Fields; Jizhong Zhou
Journal:  Appl Environ Microbiol       Date:  2005-09       Impact factor: 4.792

3.  Development and evaluation of genome-probing microarrays for monitoring lactic acid bacteria.

Authors:  Jin-Woo Bae; Sung-Keun Rhee; Ja Ryeong Park; Won-Hyong Chung; Young-Do Nam; Insun Lee; Hongik Kim; Yong-Ha Park
Journal:  Appl Environ Microbiol       Date:  2005-12       Impact factor: 4.792

4.  Microarray-based analysis of subnanogram quantities of microbial community DNAs by using whole-community genome amplification.

Authors:  Liyou Wu; Xueduan Liu; Christopher W Schadt; Jizhong Zhou
Journal:  Appl Environ Microbiol       Date:  2006-07       Impact factor: 4.792

5.  Population dynamics within a microbial consortium during growth on diesel fuel in saline environments.

Authors:  Sabine Kleinsteuber; Volker Riis; Ingo Fetzer; Hauke Harms; Susann Müller
Journal:  Appl Environ Microbiol       Date:  2006-05       Impact factor: 4.792

Review 6.  Microarray applications in microbial ecology research.

Authors:  T J Gentry; G S Wickham; C W Schadt; Z He; J Zhou
Journal:  Microb Ecol       Date:  2006-08-08       Impact factor: 4.552

7.  Effects of target length on the hybridization efficiency and specificity of rRNA-based oligonucleotide microarrays.

Authors:  Wen-Tso Liu; Huiling Guo; Jer-Horng Wu
Journal:  Appl Environ Microbiol       Date:  2006-10-27       Impact factor: 4.792

8.  Microarray-based analysis of microbial community RNAs by whole-community RNA amplification.

Authors:  Haichun Gao; Zamin K Yang; Terry J Gentry; Liyou Wu; Christopher W Schadt; Jizhong Zhou
Journal:  Appl Environ Microbiol       Date:  2006-11-10       Impact factor: 4.792

9.  Identification of non-specific hybridization using an empirical equation fitted to non-equilibrium dissociation curves.

Authors:  Samuel W Baushke; Robert D Stedtfeld; Dieter M Tourlousse; Farhan Ahmad; Lukas M Wick; Erdogan Gulari; James M Tiedje; Syed A Hashsham
Journal:  J Microbiol Methods       Date:  2012-04-17       Impact factor: 2.363

10.  Detection of genes involved in biodegradation and biotransformation in microbial communities by using 50-mer oligonucleotide microarrays.

Authors:  Sung-Keun Rhee; Xueduan Liu; Liyou Wu; Song C Chong; Xiufeng Wan; Jizhong Zhou
Journal:  Appl Environ Microbiol       Date:  2004-07       Impact factor: 4.792
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