Literature DB >> 12175334

A catalytic consensus motif for D-mannitol 2-dehydrogenase, a member of a polyol-specific long-chain dehydrogenase family, revealed by kinetic characterization of site-directed mutants of the enzyme from Pseudomonas fluorescens.

Mario Klimacek1, Bernd Nidetzky.   

Abstract

Lys-295, Asn-300 and His-303 of D-mannitol 2-dehydrogenase from Pseudomonas fluorescens were mutated individually into alanine (K295A, N300A and H303A respectively). Purified mutants displayed catalytic efficiencies for NAD(+)-dependent oxidation of D-mannitol 300-fold (H303A), 1000-fold (N300A) and approx. 400000-fold (K295A) below the wild-type level. Comparison of primary kinetic isotope effects on kinetic parameters for D-fructose reduction by wild-type and mutants at pH 10.0 demonstrate that Asn-300 has an auxiliary role in stabilization of the transition state of hydride transfer, and His-303 contributes to substrate positioning. The large solvent isotope effect of 11+/-1 on k (cat) for mannitol oxidation by K295A at pH((2)H) 10.5 suggests a role for Lys-295 in general base enzymic catalysis. Positional conservation of Lys-295, Asn-300 and His-303 across a family of polyol-specific long-chain dehydrogenases suggests a unique catalytic signature: Lys-Xaa(4)-Asn-Xaa(2)-His (where 'Xaa' denotes 'any amino acid').

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Year:  2002        PMID: 12175334      PMCID: PMC1222881          DOI: 10.1042/BJ20020932

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  12 in total

1.  Different segment similarities in long-chain dehydrogenases.

Authors:  B Persson; J Jeffery; H Jörnvall
Journal:  Biochem Biophys Res Commun       Date:  1991-05-31       Impact factor: 3.575

2.  Kinetic study of the catalytic mechanism of mannitol dehydrogenase from Pseudomonas fluorescens.

Authors:  M Slatner; B Nidetzky; K D Kulbe
Journal:  Biochemistry       Date:  1999-08-10       Impact factor: 3.162

3.  Glycerol dehydrogenase. structure, specificity, and mechanism of a family III polyol dehydrogenase.

Authors:  S N Ruzheinikov; J Burke; S Sedelnikova; P J Baker; R Taylor; P A Bullough; N M Muir; M G Gore; D W Rice
Journal:  Structure       Date:  2001-09       Impact factor: 5.006

4.  Substitutions in a flexible loop of horse liver alcohol dehydrogenase hinder the conformational change and unmask hydrogen transfer.

Authors:  S Ramaswamy; D H Park; B V Plapp
Journal:  Biochemistry       Date:  1999-10-19       Impact factor: 3.162

5.  The crystallographic structure of the mannitol 2-dehydrogenase NADP+ binary complex from Agaricus bisporus.

Authors:  S Hörer; J Stoop; H Mooibroek; U Baumann; J Sassoon
Journal:  J Biol Chem       Date:  2001-05-02       Impact factor: 5.157

6.  Examining the relative timing of hydrogen abstraction steps during NAD(+)-dependent oxidation of secondary alcohols catalyzed by long-chain D-mannitol dehydrogenase from Pseudomonas fluorescens using pH and kinetic isotope effects.

Authors:  Mario Klimacek; Bernd Nidetzky
Journal:  Biochemistry       Date:  2002-08-06       Impact factor: 3.162

7.  Cloning, nucleotide sequence and characterization of the mannitol dehydrogenase gene from Rhodobacter sphaeroides.

Authors:  K H Schneider; F Giffhorn; S Kaplan
Journal:  J Gen Microbiol       Date:  1993-10

8.  A super-family of medium-chain dehydrogenases/reductases (MDR). Sub-lines including zeta-crystallin, alcohol and polyol dehydrogenases, quinone oxidoreductase enoyl reductases, VAT-1 and other proteins.

Authors:  B Persson; J S Zigler; H Jörnvall
Journal:  Eur J Biochem       Date:  1994-11-15

9.  Sequence analysis of a mannitol dehydrogenase cDNA from plants reveals a function for the pathogenesis-related protein ELI3.

Authors:  J D Williamson; J M Stoop; M O Massel; M A Conkling; D M Pharr
Journal:  Proc Natl Acad Sci U S A       Date:  1995-08-01       Impact factor: 11.205

Review 10.  Short-chain dehydrogenases/reductases (SDR).

Authors:  H Jörnvall; B Persson; M Krook; S Atrian; R Gonzàlez-Duarte; J Jeffery; D Ghosh
Journal:  Biochemistry       Date:  1995-05-09       Impact factor: 3.162

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  10 in total

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Authors:  Jennifer Puttick; Claire Vieille; Seung H Song; Michel N Fodje; Pawel Grochulski; Louis T J Delbaere
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2.  Quantitative functional characterization of conserved molecular interactions in the active site of mannitol 2-dehydrogenase.

Authors:  James E Lucas; Justin B Siegel
Journal:  Protein Sci       Date:  2015-04-02       Impact factor: 6.725

3.  The mannitol utilization system of the marine bacterium Zobellia galactanivorans.

Authors:  Agnès Groisillier; Aurore Labourel; Gurvan Michel; Thierry Tonon
Journal:  Appl Environ Microbiol       Date:  2014-12-29       Impact factor: 4.792

4.  From alcohol dehydrogenase to a "one-way" carbonyl reductase by active-site redesign: a mechanistic study of mannitol 2-dehydrogenase from pseudomonas fluorescens.

Authors:  Mario Klimacek; Bernd Nidetzky
Journal:  J Biol Chem       Date:  2010-07-16       Impact factor: 5.157

5.  On the role of Brønsted catalysis in Pseudomonas fluorescens mannitol 2-dehydrogenase.

Authors:  Mario Klimacek; Kathryn L Kavanagh; David K Wilson; Bernd Nidetzky
Journal:  Biochem J       Date:  2003-10-01       Impact factor: 3.857

6.  Dynamic mechanism of proton transfer in mannitol 2-dehydrogenase from Pseudomonas fluorescens: mobile GLU292 controls proton relay through a water channel that connects the active site with bulk solvent.

Authors:  Mario Klimacek; Michael Brunsteiner; Bernd Nidetzky
Journal:  J Biol Chem       Date:  2011-12-22       Impact factor: 5.157

7.  A highly efficient sorbitol dehydrogenase from Gluconobacter oxydans G624 and improvement of its stability through immobilization.

Authors:  Tae-Su Kim; Sanjay K S Patel; Chandrabose Selvaraj; Woo-Suk Jung; Cheol-Ho Pan; Yun Chan Kang; Jung-Kul Lee
Journal:  Sci Rep       Date:  2016-09-16       Impact factor: 4.379

8.  Unidirectional mannitol synthesis of Acinetobacter baumannii MtlD is facilitated by the helix-loop-helix-mediated dimer formation.

Authors:  Heng-Keat Tam; Patricia König; Stephanie Himpich; Ngoc Dinh Ngu; Rupert Abele; Volker Müller; Klaas M Pos
Journal:  Proc Natl Acad Sci U S A       Date:  2022-04-01       Impact factor: 12.779

Review 9.  Medium- and short-chain dehydrogenase/reductase gene and protein families : the SDR superfamily: functional and structural diversity within a family of metabolic and regulatory enzymes.

Authors:  K L Kavanagh; H Jörnvall; B Persson; U Oppermann
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10.  Characterization of mannitol-2-dehydrogenase in Saccharina japonica: evidence for a new polyol-specific long-chain dehydrogenases/reductase.

Authors:  Zhanru Shao; Pengyan Zhang; Qiuying Li; Xiuliang Wang; Delin Duan
Journal:  PLoS One       Date:  2014-05-15       Impact factor: 3.240

  10 in total

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