Literature DB >> 12142140

Modeling enzyme reactivity in organic solvents and water through computer simulations.

Giorgio Colombo1, Giacomo Carrea.   

Abstract

In this article, we review how molecular modeling techniques can be used to shed light on how water and organic solvents influence the reactivity of enzymes. The application of thermodynamics-based models allowed the first qualitative predictions on the selectivity of many reaction types. However, it was with the application of quantum mechanical/molecular mechanical (QM/MM) methods that quantitative models of actual reactivity patterns could be realistically formulated.

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Year:  2002        PMID: 12142140     DOI: 10.1016/s0168-1656(02)00034-2

Source DB:  PubMed          Journal:  J Biotechnol        ISSN: 0168-1656            Impact factor:   3.307


  4 in total

1.  Effects of organic solvents and substrate binding on trypsin in acetonitrile and hexane media.

Authors:  Yanyan Meng; Yuan Yuan; Yanyan Zhu; Yanzhi Guo; Menglong Li; Zhimeng Wang; Xuemei Pu; Lin Jiang
Journal:  J Mol Model       Date:  2013-06-23       Impact factor: 1.810

2.  A novel thermostable and organic solvent-tolerant lipase from Xanthomonas oryzae pv. oryzae YB103: screening, purification and characterization.

Authors:  Qiurun Mo; Aili Liu; Hailun Guo; Yan Zhang; Mu Li
Journal:  Extremophiles       Date:  2016-01-20       Impact factor: 2.395

3.  Modeling structure and flexibility of Candida antarctica lipase B in organic solvents.

Authors:  Peter Trodler; Jürgen Pleiss
Journal:  BMC Struct Biol       Date:  2008-02-06

4.  Counteraction of Trehalose on N, N-Dimethylformamide-Induced Candida rugosa Lipase Denaturation: Spectroscopic Insight and Molecular Dynamic Simulation.

Authors:  Xin Yang; Ling Jiang; Yigang Jia; Yi Hu; Qing Xu; Xian Xu; He Huang
Journal:  PLoS One       Date:  2016-03-31       Impact factor: 3.240

  4 in total

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