Literature DB >> 12139438

Computer programs for eukaryotic gene prediction.

Vladimir Makarov1.   

Abstract

Seven popular programs for gene prediction in eukaryotic organisms are described and evaluated on the basis of availability for in-house and on-line use and prediction accuracy. This report outlines generally applicable approaches to computational gene prediction and known limitations in this field.

Mesh:

Year:  2002        PMID: 12139438     DOI: 10.1093/bib/3.2.195

Source DB:  PubMed          Journal:  Brief Bioinform        ISSN: 1467-5463            Impact factor:   11.622


  6 in total

1.  A method for construction, cloning and expression of intron-less gene from unannotated genomic DNA.

Authors:  Vineet Agrawal; Bharti Gupta; Uttam Chand Banerjee; Nilanjan Roy
Journal:  Mol Biotechnol       Date:  2008-06-10       Impact factor: 2.695

2.  OMIGA: Optimized Maker-Based Insect Genome Annotation.

Authors:  Jinding Liu; Huamei Xiao; Shuiqing Huang; Fei Li
Journal:  Mol Genet Genomics       Date:  2014-03-09       Impact factor: 3.291

3.  Gene organization features in A/T-rich organisms.

Authors:  Karol Szafranski; Rüdiger Lehmann; Genis Parra; Roderic Guigo; Gernot Glöckner
Journal:  J Mol Evol       Date:  2005-01       Impact factor: 2.395

4.  Design of high-performance parallelized gene predictors in MATLAB.

Authors:  Sylvain Robert Rivard; Jean-Gabriel Mailloux; Rachid Beguenane; Hung Tien Bui
Journal:  BMC Res Notes       Date:  2012-04-10

5.  The genomic features of parasitism, Polyembryony and immune evasion in the endoparasitic wasp Macrocentrus cingulum.

Authors:  Chuanlin Yin; Meizhen Li; Jian Hu; Kun Lang; Qiming Chen; Jinding Liu; Dianhao Guo; Kang He; Yipei Dong; Jiapeng Luo; Zhenkun Song; James R Walters; Wenqing Zhang; Fei Li; Xuexin Chen
Journal:  BMC Genomics       Date:  2018-05-30       Impact factor: 3.969

6.  Identification of prophages in bacterial genomes by dinucleotide relative abundance difference.

Authors:  K V Srividhya; V Alaguraj; G Poornima; Dinesh Kumar; G P Singh; L Raghavenderan; A V S K Mohan Katta; Preeti Mehta; S Krishnaswamy
Journal:  PLoS One       Date:  2007-11-21       Impact factor: 3.240

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.