Literature DB >> 12136235

Analysis of phylogenetically reconstructed mutational spectra in human mitochondrial DNA control region.

Boris A Malyarchuk1, Igor B Rogozin, Vladimir B Berikov, Miroslava V Derenko.   

Abstract

Analysis of mutations in mitochondrial DNA is an important issue in population and evolutionary genetics. To study spontaneous base substitutions in human mitochondrial DNA we reconstructed the mutational spectra of the hypervariable segments I and II (HVS I and II) using published data on polymorphisms from various human populations. An excess of pyrimidine transitions was found both in HVS I and II regions. By means of classification analysis numerous mutational hotspots were revealed in these spectra. Context analysis of hotspots revealed a complex influence of neighboring bases on mutagenesis in the HVS I region. Further statistical analysis suggested that a transient misalignment dislocation mutagenesis operating in monotonous runs of nucleotides play an important role for generating base substitutions in mitochondrial DNA and define context properties of mtDNA. Our results suggest that dislocation mutagenesis in HVS I and II is a fingerprint of errors produced by DNA polymerase gamma in the course of human mitochondrial DNA replication

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Year:  2002        PMID: 12136235     DOI: 10.1007/s00439-002-0740-4

Source DB:  PubMed          Journal:  Hum Genet        ISSN: 0340-6717            Impact factor:   4.132


  13 in total

1.  The fingerprint of phantom mutations in mitochondrial DNA data.

Authors:  Hans-Jürgen Bandelt; Lluís Quintana-Murci; Antonio Salas; Vincent Macaulay
Journal:  Am J Hum Genet       Date:  2002-10-15       Impact factor: 11.025

2.  Single nucleotide polymorphisms over the entire mtDNA genome that increase the power of forensic testing in Caucasians.

Authors:  Michael D Coble; Rebecca S Just; Jennifer E O'Callaghan; Ilona H Letmanyi; Christine T Peterson; Jodi A Irwin; Thomas J Parsons
Journal:  Int J Legal Med       Date:  2004-02-04       Impact factor: 2.686

3.  On the Etruscan mitochondrial DNA contribution to modern humans.

Authors:  Boris A Malyarchuk; Igor B Rogozin
Journal:  Am J Hum Genet       Date:  2004-11       Impact factor: 11.025

4.  Mitochondrial DNA sequence variation in single cells from leukemia patients.

Authors:  Yong-Gang Yao; Yoji Ogasawara; Sachiko Kajigaya; Jeffrey J Molldrem; Roberto P Falcão; Maria-Carolina Pintão; J Philip McCoy; Edgar Gil Rizzatti; Neal S Young
Journal:  Blood       Date:  2006-08-31       Impact factor: 22.113

5.  Application of a quasi-median network analysis for the visualization of character conflicts to a population sample of mitochondrial DNA control region sequences from southern Germany (Ulm).

Authors:  Anita Brandstätter; Rachel Klein; Nina Duftner; Peter Wiegand; Walther Parson
Journal:  Int J Legal Med       Date:  2006-07-27       Impact factor: 2.686

6.  Construction of Japanese BAC library Yamato-2 (JY2): a set of 330K clone resources of damage-minimized DNA taken from a genetically established Japanese individual.

Authors:  Yasunobu Terabayashi; Keiko Morita; Joon Young Park; Soichiro Saito; Takashi Shiina; Hidetoshi Inoko; Isamu Ishiwata; Kazuhiro E Fujimori; Takashi Hirano
Journal:  Hum Cell       Date:  2011-05-25       Impact factor: 4.174

7.  Compensatory evolution in mitochondrial tRNAs navigates valleys of low fitness.

Authors:  Margarita V Meer; Alexey S Kondrashov; Yael Artzy-Randrup; Fyodor A Kondrashov
Journal:  Nature       Date:  2010-02-24       Impact factor: 49.962

8.  Distinct patterns of mitochondrial genome diversity in bonobos (Pan paniscus) and humans.

Authors:  Gábor Zsurka; Tatiana Kudina; Viktoriya Peeva; Kerstin Hallmann; Christian E Elger; Konstantin Khrapko; Wolfram S Kunz
Journal:  BMC Evol Biol       Date:  2010-09-02       Impact factor: 3.260

9.  Analysis of Canis mitochondrial DNA demonstrates high concordance between the control region and ATPase genes.

Authors:  Linda Y Rutledge; Brent R Patterson; Bradley N White
Journal:  BMC Evol Biol       Date:  2010-07-16       Impact factor: 3.260

10.  Common mitochondrial polymorphisms as risk factor for endometrial cancer.

Authors:  Anna M Czarnecka; Aleksandra Klemba; Andrzej Semczuk; Katarzyna Plak; Barbara Marzec; Tomasz Krawczyk; Barbara Kofler; Pawel Golik; Ewa Bartnik
Journal:  Int Arch Med       Date:  2009-10-28
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