Literature DB >> 12136085

Functional interaction between TATA and upstream CACGTG elements regulates the temporally specific expression of Otx mRNAs during early embryogenesis of the sea urchin, Hemicentrotus pulcherrimus.

Akiko Kobayashi1, Koji Akasaka, Masashi Kawaichi, Tetsuro Kokubo.   

Abstract

The orthodenticle-related protein (HpOtx) gene derived from the sea urchin Hemicentrotus pulcherrimus encodes two distinct isoforms, HpOtxE and HpOtxL, which are differentially expressed during early embryogenesis and are driven by TATA-less and TATA-containing promoters, respectively. In order to determine if the TATA element is involved in the establishment of the temporally specific expression profile of the HpOtx gene, reporter genes under the control of modified or wild-type HpOtxE/L promoters were introduced into fertilized eggs. When the activities of the different promoter constructs were examined, we found that deletion of the TATA element from the HpOtxL promoter causes early expression, whereas addition of the TATA element to the HpOtxE promoter causes delayed expression. This suppressive action of the TATA element on transcription from the HpOtxE/L promoters requires the presence of upstream CACGTG elements. These results indicate that the presence or absence of the TATA element determines, at least in part, the expression profile of the HpOtxE/L promoters, in concert with the transcription factor(s) that binds to the upstream CACGTG element. Immunoblot and gel retardation analyses suggest that functional interaction between CACGTG binding factor(s) and TATA factor(s) may be regulated by an unidentified third factor(s) during early embryogenesis in the sea urchin.

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Year:  2002        PMID: 12136085      PMCID: PMC135759          DOI: 10.1093/nar/gkf439

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  53 in total

1.  Upstream element of the sea urchin arylsulfatase gene serves as an insulator.

Authors:  K Akasaka; A Nishimura; K Takata; K Mitsunaga; F Mibuka; H Ueda; S Hirose; K Tsutsui; H Shimada
Journal:  Cell Mol Biol (Noisy-le-grand)       Date:  1999-07       Impact factor: 1.770

2.  Structure and function of a sea urchin orthodenticle-related gene (HpOtx).

Authors:  T Kiyama; K Akasaka; K Takata; K Mitsunaga-Nakatsubo; N Sakamoto; H Shimada
Journal:  Dev Biol       Date:  1998-01-15       Impact factor: 3.582

3.  Nuclear translocation and carboxyl-terminal domain phosphorylation of RNA polymerase II delineate the two phases of zygotic gene activation in mammalian embryos.

Authors:  S Bellier; S Chastant; P Adenot; M Vincent; J P Renard; O Bensaude
Journal:  EMBO J       Date:  1997-10-15       Impact factor: 11.598

4.  A cis-regulatory element within the 5' flanking region of arylsulfatase gene of sea urchin, Hemicentrotus pulcherrimus.

Authors:  J Morokuma; K Akasaka; K Mitsunaga-Nakatsubo; H Shimada
Journal:  Dev Growth Differ       Date:  1997-08       Impact factor: 2.053

5.  Two distinct forms of USF in the Lytechinus sea urchin embryo do not play a role in LpS1 gene inactivation upon disruption of the extracellular matrix.

Authors:  J M George; C A Seid; H Lee; C R Tomlinson
Journal:  Mol Reprod Dev       Date:  1996-09       Impact factor: 2.609

6.  Role of the first round of DNA replication in reprogramming gene expression in the preimplantation mouse embryo.

Authors:  W Davis; R M Schultz
Journal:  Mol Reprod Dev       Date:  1997-08       Impact factor: 2.609

7.  Two isoforms of orthodenticle-related proteins (HpOtx) bind to the enhancer element of sea urchin arylsulfatase gene.

Authors:  N Sakamoto; K Akasaka; K Mitsunaga-Nakatsubo; K Takata; T Nishitani; H Shimada
Journal:  Dev Biol       Date:  1997-01-15       Impact factor: 3.582

8.  Developmental acquisition of enhancer function requires a unique coactivator activity.

Authors:  S Majumder; Z Zhao; K Kaneko; M L DePamphilis
Journal:  EMBO J       Date:  1997-04-01       Impact factor: 11.598

9.  Mechanism of differential utilization of the his3 TR and TC TATA elements.

Authors:  V Iyer; K Struhl
Journal:  Mol Cell Biol       Date:  1995-12       Impact factor: 4.272

Review 10.  Biochemistry and structural biology of transcription factor IID (TFIID).

Authors:  S K Burley; R G Roeder
Journal:  Annu Rev Biochem       Date:  1996       Impact factor: 23.643

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  2 in total

1.  Promoter activity of the sea urchin (Paracentrotus lividus) nucleosomal H3 and H2A and linker H1 {alpha}-histone genes is modulated by enhancer and chromatin insulator.

Authors:  Vincenzo Cavalieri; Raffaella Melfi; Giovanni Spinelli
Journal:  Nucleic Acids Res       Date:  2009-12       Impact factor: 16.971

2.  Real-time monitoring of functional interactions between upstream and core promoter sequences in living cells of sea urchin embryos.

Authors:  Akiko Kobayashi; Youko Watanabe; Koji Akasaka; Tetsuro Kokubo
Journal:  Nucleic Acids Res       Date:  2007-07-10       Impact factor: 16.971

  2 in total

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