Literature DB >> 12127461

Evolution of protein structures and functions.

Lisa N Kinch1, Nick V Grishin.   

Abstract

Within the ever-expanding repertoire of known protein sequences and structures, many examples of evolving three-dimensional structures are emerging that illustrate the plasticity and robustness of protein folds. The mechanisms by which protein folds change often include the fusion of duplicated domains, followed by divergence through mutation. Such changes reflect both the stability of protein folds and the requirements of protein function.

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Year:  2002        PMID: 12127461     DOI: 10.1016/s0959-440x(02)00338-x

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  55 in total

1.  Double-stranded DNA bacteriophage prohead protease is homologous to herpesvirus protease.

Authors:  Hua Cheng; Nan Shen; Jimin Pei; Nick V Grishin
Journal:  Protein Sci       Date:  2004-08       Impact factor: 6.725

2.  Evolution of substrate specificity within a diverse family of beta/alpha-barrel-fold basic amino acid decarboxylases: X-ray structure determination of enzymes with specificity for L-arginine and carboxynorspermidine.

Authors:  Xiaoyi Deng; Jeongmi Lee; Anthony J Michael; Diana R Tomchick; Elizabeth J Goldsmith; Margaret A Phillips
Journal:  J Biol Chem       Date:  2010-06-08       Impact factor: 5.157

Review 3.  Classification of proteins with shared motifs and internal repeats in the ECOD database.

Authors:  R Dustin Schaeffer; Lisa N Kinch; Yuxing Liao; Nick V Grishin
Journal:  Protein Sci       Date:  2016-02-21       Impact factor: 6.725

4.  Divergent evolution within protein superfolds inferred from profile-based phylogenetics.

Authors:  Douglas L Theobald; Deborah S Wuttke
Journal:  J Mol Biol       Date:  2005-09-20       Impact factor: 5.469

5.  Evolutionary plasticity of protein families: coupling between sequence and structure variation.

Authors:  Anna R Panchenko; Yuri I Wolf; Larisa A Panchenko; Thomas Madej
Journal:  Proteins       Date:  2005-11-15

6.  The difficult road from sequence to function.

Authors:  Robert H White
Journal:  J Bacteriol       Date:  2006-05       Impact factor: 3.490

7.  Protein domain assignment from the recurrence of locally similar structures.

Authors:  Chin-Hsien Tai; Vichetra Sam; Jean-Francois Gibrat; Jean Garnier; Peter J Munson; Byungkook Lee
Journal:  Proteins       Date:  2010-12-22

8.  The network of sequence flow between protein structures.

Authors:  Leonid Meyerguz; Jon Kleinberg; Ron Elber
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-27       Impact factor: 11.205

9.  Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable data sets.

Authors:  Hua Cheng; Bong-Hyun Kim; Nick V Grishin
Journal:  J Mol Biol       Date:  2008-01-05       Impact factor: 5.469

10.  Manual classification strategies in the ECOD database.

Authors:  Hua Cheng; Yuxing Liao; R Dustin Schaeffer; Nick V Grishin
Journal:  Proteins       Date:  2015-05-08
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