Literature DB >> 12127451

Force spectroscopy of single DNA and RNA molecules.

Mark C Williams1, Ioulia Rouzina.   

Abstract

Experiments in which single molecules of RNA and DNA are stretched, and the resulting force as a function of extension is measured have yielded new information about the physical, chemical and biological properties of these important molecules. The behavior of both single-stranded and double-stranded nucleic acids under changing solution conditions, such as ionic strength, pH and temperature, has been studied in detail. There has also been progress in using these techniques to study both the kinetics and equilibrium thermodynamics of DNA-protein interactions. These studies generate unique insights into the functions of these proteins in the cell.

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Year:  2002        PMID: 12127451     DOI: 10.1016/s0959-440x(02)00340-8

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  45 in total

1.  Lipoplex thermodynamics: determination of DNA-cationic lipoid interaction energies.

Authors:  Edwin Pozharski; Robert C MacDonald
Journal:  Biophys J       Date:  2003-12       Impact factor: 4.033

Review 2.  Single-molecule stretching studies of RNA chaperones.

Authors:  Hao Wu; Ioulia Rouzina; Mark C Williams
Journal:  RNA Biol       Date:  2010-11-01       Impact factor: 4.652

3.  Dual binding modes for an HMG domain from human HMGB2 on DNA.

Authors:  Micah McCauley; Philip R Hardwidge; L James Maher; Mark C Williams
Journal:  Biophys J       Date:  2005-04-15       Impact factor: 4.033

4.  DNA overstretching transition: ionic strength effects.

Authors:  Olli Punkkinen; Per Lyngs Hansen; Ling Miao; Ilpo Vattulainen
Journal:  Biophys J       Date:  2005-05-27       Impact factor: 4.033

5.  Theory of electrostatically regulated binding of T4 gene 32 protein to single- and double-stranded DNA.

Authors:  Ioulia Rouzina; Kiran Pant; Richard L Karpel; Mark C Williams
Journal:  Biophys J       Date:  2005-07-01       Impact factor: 4.033

6.  Sequence-dependent base pair opening in DNA double helix.

Authors:  Andrew Krueger; Ekaterina Protozanova; Maxim D Frank-Kamenetskii
Journal:  Biophys J       Date:  2006-02-24       Impact factor: 4.033

7.  There and (slowly) back again: entropy-driven hysteresis in a model of DNA overstretching.

Authors:  Stephen Whitelam; Sander Pronk; Phillip L Geissler
Journal:  Biophys J       Date:  2007-11-02       Impact factor: 4.033

8.  Predicting the rupture probabilities of molecular bonds in series.

Authors:  Gregor Neuert; Christian H Albrecht; Hermann E Gaub
Journal:  Biophys J       Date:  2007-04-27       Impact factor: 4.033

Review 9.  Optical tweezers experiments resolve distinct modes of DNA-protein binding.

Authors:  Micah J McCauley; Mark C Williams
Journal:  Biopolymers       Date:  2009-04       Impact factor: 2.505

10.  Mesoscopic models for DNA stretching under force: New results and comparison with experiments.

Authors:  Manoel Manghi; Nicolas Destainville; John Palmeri
Journal:  Eur Phys J E Soft Matter       Date:  2012-10-29       Impact factor: 1.890

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