Literature DB >> 12127445

RNA-protein interactions.

Kathleen B Hall1.   

Abstract

Recent discoveries have revealed that there is a myriad of RNAs and associated RNA-binding proteins that spatially and temporally appear in the cells of all organisms. The structures of these RNA-protein complexes are providing valuable insights into the binding modes and functional implications of these interactions. Even the common RNA-binding domains (RBDs) and the double stranded RNA binding motifs (dsRBMs) have been shown to exhibit a plethora of binding modes.

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Year:  2002        PMID: 12127445     DOI: 10.1016/s0959-440x(02)00323-8

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  35 in total

1.  Quantitation of free energy profiles in RNA-ligand interactions by nucleotide analog interference mapping.

Authors:  Jessee C Cochrane; Robert T Batey; Scott A Strobel
Journal:  RNA       Date:  2003-10       Impact factor: 4.942

2.  Resonance assignment and secondary structure of the La motif.

Authors:  Domenico Sanfelice; Jeff Babon; Geoff Kelly; Stephen Curry; Maria R Conte
Journal:  J Biomol NMR       Date:  2004-07       Impact factor: 2.835

3.  A new hydrogen-bonding potential for the design of protein-RNA interactions predicts specific contacts and discriminates decoys.

Authors:  Yu Chen; Tanja Kortemme; Tim Robertson; David Baker; Gabriele Varani
Journal:  Nucleic Acids Res       Date:  2004-09-30       Impact factor: 16.971

4.  Conformational dynamics of RNA-peptide binding: a molecular dynamics simulation study.

Authors:  Yuguang Mu; Gerhard Stock
Journal:  Biophys J       Date:  2005-10-20       Impact factor: 4.033

5.  The positional, structural, and sequence requirements of the Drosophila TLS RNA localization element.

Authors:  Robert S Cohen; Sui Zhang; Gretchen L Dollar
Journal:  RNA       Date:  2005-07       Impact factor: 4.942

6.  Prediction of RNA binding sites in proteins from amino acid sequence.

Authors:  Michael Terribilini; Jae-Hyung Lee; Changhui Yan; Robert L Jernigan; Vasant Honavar; Drena Dobbs
Journal:  RNA       Date:  2006-06-21       Impact factor: 4.942

7.  Conformational transitions in RNA single uridine and adenosine bulge structures: a molecular dynamics free energy simulation study.

Authors:  André Barthel; Martin Zacharias
Journal:  Biophys J       Date:  2006-01-06       Impact factor: 4.033

8.  MicroRNA expression pattern of undifferentiated and differentiated human embryonic stem cells.

Authors:  Uma Lakshmipathy; Brad Love; Loyal A Goff; Rebecka Jörnsten; Ralph Graichen; Ronald P Hart; Jonathan D Chesnut
Journal:  Stem Cells Dev       Date:  2007-12       Impact factor: 3.272

9.  Binding of the bacteriophage P22 N-peptide to the boxB RNA motif studied by molecular dynamics simulations.

Authors:  Ranjit P Bahadur; Srinivasaraghavan Kannan; Martin Zacharias
Journal:  Biophys J       Date:  2009-12-16       Impact factor: 4.033

10.  Quantitative analysis of single-molecule RNA-protein interaction.

Authors:  Alexander Fuhrmann; Jan C Schoening; Dario Anselmetti; Dorothee Staiger; Robert Ros
Journal:  Biophys J       Date:  2009-06-17       Impact factor: 4.033

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