Literature DB >> 12124288

Direct modeling of x-ray diffraction pattern from skeletal muscle in rigor.

Natalia A Koubassova1, A K Tsaturyan.   

Abstract

Available high-resolution structures of F-actin, myosin subfragment 1 (S1), and their complex, actin-S1, were used to calculate a 2D x-ray diffraction pattern from skeletal muscle in rigor. Actin sites occupied by myosin heads were chosen using a "principle of minimal elastic distortion energy" so that the 3D actin labeling pattern in the A-band of a sarcomere was determined by a single parameter. Computer calculations demonstrate that the total off-meridional intensity of a layer line does not depend on disorder of the filament lattice. The intensity of the first actin layer A1 line is independent of tilting of the "lever arm" region of the myosin heads. Myosin-based modulation of actin labeling pattern leads not only to the appearance of the myosin and "beating" actin-myosin layer lines in rigor diffraction patterns, but also to changes in the intensities of some actin layer lines compared to random labeling. Results of the modeling were compared to experimental data obtained from small bundles of rabbit muscle fibers. A good fit of the data was obtained without recourse to global parameter search. The approach developed here provides a background for quantitative interpretation of the x-ray diffraction data from contracting muscle and understanding structural changes underlying muscle contraction.

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Year:  2002        PMID: 12124288      PMCID: PMC1302210          DOI: 10.1016/S0006-3495(02)75232-6

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  40 in total

1.  Interference fine structure and sarcomere length dependence of the axial x-ray pattern from active single muscle fibers.

Authors:  M Linari; G Piazzesi; I Dobbie; N Koubassova; M Reconditi; T Narayanan; O Diat; M Irving; V Lombardi
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-20       Impact factor: 11.205

2.  Diffraction by partially occupied helices.

Authors:  Andrey K Tsaturyan
Journal:  Acta Crystallogr A       Date:  2002-04-18       Impact factor: 2.290

3.  Crystal structure of a vertebrate smooth muscle myosin motor domain and its complex with the essential light chain: visualization of the pre-power stroke state.

Authors:  R Dominguez; Y Freyzon; K M Trybus; C Cohen
Journal:  Cell       Date:  1998-09-04       Impact factor: 41.582

4.  X-ray diffraction studies of cross-bridges weakly bound to actin in relaxed skinned fibers of rabbit psoas muscle.

Authors:  S Xu; S Malinchik; D Gilroy; T Kraft; B Brenner; L C Yu
Journal:  Biophys J       Date:  1997-11       Impact factor: 4.033

5.  Muscle force is generated by myosin heads stereospecifically attached to actin.

Authors:  S Y Bershitsky; A K Tsaturyan; O N Bershitskaya; G I Mashanov; P Brown; R Burns; M A Ferenczi
Journal:  Nature       Date:  1997-07-10       Impact factor: 49.962

6.  Three-dimensional structure of the vertebrate muscle A-band. II. The myosin filament superlattice.

Authors:  P K Luther; J M Squire
Journal:  J Mol Biol       Date:  1980-08-25       Impact factor: 5.469

7.  Fraction of myosin heads bound to thin filaments in rigor fibrils from insect flight and vertebrate muscles.

Authors:  S J Lovell; P J Knight; W F Harrington
Journal:  Nature       Date:  1981-10-22       Impact factor: 49.962

8.  Modeling rigor cross-bridge patterns in muscle I. Initial studies of the rigor lattice of insect flight muscle.

Authors:  J C Haselgrove; M K Reedy
Journal:  Biophys J       Date:  1978-12       Impact factor: 4.033

9.  Kinetics of relaxation from rigor of permeabilized fast-twitch skeletal fibers from the rabbit using a novel caged ATP and apyrase.

Authors:  H Thirlwell; J E Corrie; G P Reid; D R Trentham; M A Ferenczi
Journal:  Biophys J       Date:  1994-12       Impact factor: 4.033

10.  Three-dimensional structure of myosin subfragment-1: a molecular motor.

Authors:  I Rayment; W R Rypniewski; K Schmidt-Bäse; R Smith; D R Tomchick; M M Benning; D A Winkelmann; G Wesenberg; H M Holden
Journal:  Science       Date:  1993-07-02       Impact factor: 47.728

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  20 in total

1.  Cross-bridge number, position, and angle in target zones of cryofixed isometrically active insect flight muscle.

Authors:  Richard T Tregear; Mary C Reedy; Yale E Goldman; Kenneth A Taylor; Hanspeter Winkler; Clara Franzini-Armstrong; Hiroyuki Sasaki; Carmen Lucaveche; Michael K Reedy
Journal:  Biophys J       Date:  2004-05       Impact factor: 4.033

2.  Structural transients of contractile proteins upon sudden ATP liberation in skeletal muscle fibers.

Authors:  Jun'ichi Wakayama; Takumi Tamura; Naoto Yagi; Hiroyuki Iwamoto
Journal:  Biophys J       Date:  2004-07       Impact factor: 4.033

3.  Intensity of X-ray reflections from skeletal muscle thin filaments partially occupied with myosin heads: effect of cooperative binding.

Authors:  Takumi Tamura; Jun'ichi Wakayama; Tetsuro Fujisawa; Naoto Yagi; Hiroyuki Iwamoto
Journal:  J Muscle Res Cell Motil       Date:  2004       Impact factor: 2.698

4.  MusLABEL: a program to model striated muscle A-band lattices, to explore crossbridge interaction geometries and to simulate muscle diffraction patterns.

Authors:  John M Squire; Carlo Knupp
Journal:  J Muscle Res Cell Motil       Date:  2004       Impact factor: 2.698

5.  Myosin heads contribute to the maintenance of filament order in relaxed rabbit muscle.

Authors:  Sergey Y Bershitsky; Natalia A Koubassova; Pauline M Bennett; Michael A Ferenczi; Dmitry A Shestakov; Andrey K Tsaturyan
Journal:  Biophys J       Date:  2010-09-22       Impact factor: 4.033

6.  Structural changes of actin-bound myosin heads after a quick length change in frog skeletal muscle.

Authors:  Naoto Yagi; Hiroyuki Iwamoto; Jun'ichi Wakayama; Katsuaki Inoue
Journal:  Biophys J       Date:  2005-05-13       Impact factor: 4.033

7.  Force-generating cross-bridges during ramp-shaped releases: evidence for a new structural state.

Authors:  A Radocaj; T Weiss; W I Helsby; B Brenner; T Kraft
Journal:  Biophys J       Date:  2009-02-18       Impact factor: 4.033

8.  Dynamics of thin-filament activation in rabbit skeletal muscle fibers examined by time-resolved x-ray diffraction.

Authors:  Takumi Tamura; Jun'ichi Wakayama; Katsuaki Inoue; Naoto Yagi; Hiroyuki Iwamoto
Journal:  Biophys J       Date:  2009-02       Impact factor: 4.033

9.  Direct modeling of X-ray diffraction pattern from contracting skeletal muscle.

Authors:  Natalia A Koubassova; Sergey Y Bershitsky; Michael A Ferenczi; Andrey K Tsaturyan
Journal:  Biophys J       Date:  2008-06-06       Impact factor: 4.033

10.  RECENT IMPROVEMENTS IN SMALL ANGLE X-RAY DIFFRACTION FOR THE STUDY OF MUSCLE PHYSIOLOGY.

Authors:  Massimo Reconditi
Journal:  Rep Prog Phys       Date:  2006-10-01
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